6GCS
Cryo-EM structure of respiratory complex I from Yarrowia lipolytica
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 75-KDA PROTEIN (NUAM) | polymer | 728 | 79088.1 | 1 | UniProt (Q9UUU3) Pfam (PF13510) Pfam (PF10588) Pfam (PF22117) Pfam (PF22151) Pfam (PF00384) Pfam (PF09326) | Yarrowia lipolytica | |
| 2 | B (B) | 51-KDA PROTEIN (NUBM) | polymer | 488 | 53829.5 | 1 | UniProt (Q9UUU2) Pfam (PF01512) Pfam (PF22461) Pfam (PF10589) | Yarrowia lipolytica | |
| 3 | C (C) | 49-KDA PROTEIN (NUCM) | polymer | 466 | 52494.9 | 1 | UniProt (Q9UUU1) Pfam (PF00346) | Yarrowia lipolytica | |
| 4 | D (D) | NIMM SUBUNIT | polymer | 87 | 9806.2 | 1 | UniProt (A0A1D8NC63) Pfam (PF15879) UniProt (by SIFTS) (B5FVD3) | Yarrowia lipolytica | |
| 5 | E (E) | NUEM SUBUNIT | polymer | 375 | 42765.7 | 1 | UniProt (Q6C7X4) Pfam (PF01370) | Yarrowia lipolytica | |
| 6 | F (F) | NUFM SUBUNIT | polymer | 144 | 16657.9 | 1 | UniProt (Q6C4W9) Pfam (PF04716) | Yarrowia lipolytica | |
| 7 | G (G) | 30-KDA PROTEIN (NUGM) | polymer | 281 | 32389.6 | 1 | UniProt (Q9UUU0) Pfam (PF00329) | Yarrowia lipolytica | |
| 8 | H (H) | 24-KDA SUBUNIT (NUHM) | polymer | 243 | 27247.4 | 1 | UniProt (Q9UUT9) Pfam (PF01257) | Yarrowia lipolytica | |
| 9 | I (I) | TYKY SUBUNIT (NUIM) | polymer | 229 | 25682.3 | 1 | UniProt (Q9UUT8) Pfam (PF12838) | Yarrowia lipolytica | |
| 10 | J (J) | NUJM SUBUNIT | polymer | 198 | 20849.6 | 1 | UniProt (Q6C674) | Yarrowia lipolytica | |
| 11 | K (K) | PSST SUBUNIT (NUKM) | polymer | 210 | 23455.2 | 1 | UniProt (Q9UUT7) Pfam (PF01058) | Yarrowia lipolytica | |
| 12 | L (L) | ND4L SUBUNIT (NULM) | polymer | 86 | 9482.5 | 1 | UniProt (Q9B6D4) Pfam (PF00420) | Yarrowia lipolytica | |
| 13 | M (M) | NUMM SUBUNIT | polymer | 136 | 15149.0 | 1 | UniProt (A0A1H6Q8Z5) Pfam (PF10276) UniProt (by SIFTS) (Q6C8J9) | Yarrowia lipolytica | |
| 14 | N (O) | ACPM1 SUBUNIT | polymer | 109 | 12053.6 | 1 | UniProt (A0A1H6PXT9) Pfam (PF00550) UniProt (by SIFTS) (Q6C926) | Yarrowia lipolytica | |
| 15 | O (P) | NB4M SUBUNIT | polymer | 124 | 14778.8 | 1 | UniProt (A0A1D8N3C8) Pfam (PF13233) UniProt (by SIFTS) (Q6CI60) | Yarrowia lipolytica | |
| 16 | P (Q) | ACPM2 SUBUNIT | polymer | 132 | 14444.5 | 1 | UniProt (A0A1D8NG21) Pfam (PF00550) UniProt (by SIFTS) (Q6C7X2) | Yarrowia lipolytica | |
| 17 | Q (R) | NI2M SUBUNIT | polymer | 109 | 12902.9 | 1 | UniProt (A0A1D8NDL1) UniProt (by SIFTS) (Q6C9Z1) | Yarrowia lipolytica | |
| 18 | R (S) | NESM SUBUNIT | polymer | 159 | 13549.7 | 1 | Yarrowia lipolytica | ||
| 19 | S (U) | NUPM SUBUNIT | polymer | 172 | 19355.2 | 1 | UniProt (Q6CGB4) Pfam (PF06747) | Yarrowia lipolytica | |
| 20 | T (W) | NB6M SUBUNIT | polymer | 123 | 14112.4 | 1 | UniProt (A0A1H6PPE5) Pfam (PF06212) UniProt (by SIFTS) (B5FVF8) | Yarrowia lipolytica | |
| 21 | U (X) | NUXM SUBUNIT | polymer | 169 | 18588.2 | 1 | UniProt (A0A1D8NKB4) Pfam (PF10785) Pfam (PF12853) UniProt (by SIFTS) (Q6C4A6) | Yarrowia lipolytica | |
| 22 | V (Y) | NUYM SUBUNIT | polymer | 161 | 18656.1 | 1 | UniProt (A0A1D8N7X0) Pfam (PF04800) UniProt (by SIFTS) (Q6CEK9) | Yarrowia lipolytica | |
| 23 | W (Z) | NUZM SUBUNIT | polymer | 137 | 11677.4 | 1 | Yarrowia lipolytica | ||
| 24 | X (a) | NIAM SUBUNIT | polymer | 100 | 8528.5 | 1 | Yarrowia lipolytica | ||
| 25 | Y (b) | NEBM SUBUNIT | polymer | 64 | 5464.7 | 1 | Yarrowia lipolytica | ||
| 26 | Z (c) | NB2M SUBUNIT | polymer | 60 | 6948.9 | 1 | UniProt (B5FVE5) Pfam (PF08122) | Yarrowia lipolytica | |
| 27 | AA (d) | NIDM SUBUNIT | polymer | 92 | 11039.3 | 1 | UniProt (A0A1D8N596) Pfam (PF10249) UniProt (by SIFTS) (B5RSK3) | Yarrowia lipolytica | |
| 28 | BA (e) | NUUM SUBUNIT | polymer | 45 | 3847.7 | 1 | Yarrowia lipolytica | ||
| 29 | CA (f) | NI8M SUBUNIT | polymer | 87 | 9621.1 | 1 | UniProt (A0A1H6PJS3) Pfam (PF05047) UniProt (by SIFTS) (Q6CD73) | Yarrowia lipolytica | |
| 30 | DA (g) | NI9M SUBUNIT | polymer | 63 | 7233.3 | 1 | UniProt (A0A1D8NJR0) UniProt (by SIFTS) (B5FVF3) | Yarrowia lipolytica | |
| 31 | EA (h) | N7BM SUBUNIT | polymer | 138 | 16175.1 | 1 | UniProt (Q6CG53) Pfam (PF05071) | Yarrowia lipolytica | |
| 32 | FA (i) | UNKNOWN SUBUNIT | polymer | 53 | 4528.6 | 1 | Yarrowia lipolytica | ||
| 33 | GA (j) | NB5M SUBUNIT | polymer | 93 | 10494.9 | 1 | UniProt (Q6ZY24) | Yarrowia lipolytica | |
| 34 | HA (n) | NUNM SUBUNIT | polymer | 93 | 7932.8 | 1 | Yarrowia lipolytica | ||
| 35 | IA (1) | ND1 SUBUNIT (NU1M) | polymer | 341 | 38361.3 | 1 | UniProt (Q9B6E8) Pfam (PF00146) | Yarrowia lipolytica | NADH dehydrogenase subunit 1 |
| 36 | JA (2) | ND2 SUBUNIT (NU2M) | polymer | 469 | 53353.4 | 1 | UniProt (Q9B6C8) Pfam (PF00361) | Yarrowia lipolytica | NADH dehydrogenase subunit 2 |
| 37 | KA (3) | ND3 SUBUNIT (NU3M) | polymer | 128 | 14478.3 | 1 | UniProt (Q9B6C7) Pfam (PF00507) | Yarrowia lipolytica | NADH dehydrogenase subunit 3 |
| 38 | LA (4) | ND4 SUBUNIT (NU4M) | polymer | 486 | 54506.6 | 1 | UniProt (Q9B6D6) Pfam (PF00361) | Yarrowia lipolytica | NADH dehydrogenase subunit 4 |
| 39 | MA (5) | ND5 SUBUNIT (NU5M) | polymer | 655 | 73740.7 | 1 | UniProt (Q9B6D3) Pfam (PF00662) Pfam (PF00361) | Yarrowia lipolytica | NADH dehydrogenase subunit 5 |
| 40 | NA (6) | ND6 SUBUNIT (NU6M) | polymer | 185 | 20765.1 | 1 | UniProt (Q9B6E9) Pfam (PF00499) | Yarrowia lipolytica | NADH dehydrogenase subunit 6 |
| 41 | OA (8) | NB8M SUBUNIT | polymer | 99 | 11219.0 | 1 | UniProt (A0A1H6PKH9) Pfam (PF05676) UniProt (by SIFTS) (B5FVG1) | Yarrowia lipolytica | |
| 42 | PA (9) | NIPM SUBUNIT | polymer | 89 | 10035.7 | 1 | UniProt (A0A1D8NNZ0) Pfam (PF10200) UniProt (by SIFTS) (B5RSL7) | Yarrowia lipolytica | |
| 43 | QA, RA, TA, XA, YA... (A, B, I, K) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 6 | Chemie (SF4) | |||
| 44 | SA, WA (A, H) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 45 | UA (B) | FLAVIN MONONUCLEOTIDE | non-polymer | 456.3 | 1 | Chemie (FMN) | |||
| 46 | VA (E) | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | non-polymer | 745.4 | 1 | Chemie (NDP) | |||
| 47 | AB (M) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 48 | BB (O) | S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate | non-polymer | 568.7 | 1 | Chemie (ZMP) | |||
| 49 | CB (g) | CARDIOLIPIN | non-polymer | 1464.0 | 1 | Chemie (CDL) | |||
| 50 | DB, EB, FB (g, 1, 4) | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 3 | Chemie (3PE) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 42 |
| Total formula weight | 927291.5 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 8005.6 | |
| All* | Total formula weight | 935297.1 |
