6GB5
Structure of H-2Db with truncated SEV peptide and GL
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | H-2 class I histocompatibility antigen, D-B alpha chain | polymer | 338 | 38449.1 | 2 | UniProt (P01899) Pfam (PF00129) Pfam (PF07654) Pfam (PF06623) | Mus musculus (Mouse) | H-2D(B) |
| 2 | B, D (B, D) | Beta-2-microglobulin | polymer | 99 | 11704.4 | 2 | UniProt (P01887) Pfam (PF07654) | Mus musculus (Mouse) | |
| 3 | E, F (E, F) | PHE-ALA-PRO-GLY-ASN-TYR-PRO | polymer | 7 | 764.8 | 2 | UniProt (by SIFTS) (O57286) | Sendai virus | |
| 4 | G, H (G, H) | GLY-LEU | polymer | 2 | 188.2 | 2 | Mus musculus | ||
| 5 | I, J, L, M, N... (A, C) | SULFATE ION | non-polymer | 96.1 | 6 | Chemie (SO4) | |||
| 6 | K, P, Q (A, C, D) | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
| 7 | R, S, T, U, V... (A, B, C, D, E...) | water | water | 18.0 | 151 | Chemie (HOH) |
Sequence modifications
B, D: 1 - 99 (UniProt: P01887)
| PDB | External Database | Details |
|---|---|---|
| Asp 85 | Ala 105 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 102213.1 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 852.7 | |
| All* | Total formula weight | 103065.7 |
