6FYW
Structure of B/Brisbane/60/2008 Influenza Hemagglutinin in complex with SD83
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Hemagglutinin | polymer | 347 | 37699.1 | 1 | UniProt (C0LT35) Pfam (PF00509) In PDB | Influenza B virus (B/Brisbane/60/2008) | |
| 2 | B | Hemagglutinin | polymer | 179 | 19264.6 | 1 | UniProt (C0LT35) Pfam (PF00509) UniProt (by SIFTS) (C0LT38) In PDB | Influenza B virus (B/Brisbane/60/2008) | |
| 3 | C | Single domain antibody SD83 | polymer | 129 | 13837.3 | 1 | Lama glama | ||
| 4 | D | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 5 | E | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G55220VL) | |||
| 6 | F, G | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 7 | H | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G42227JK) | |||
| 8 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 9 | A, B | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 10 | water | water | 18.0 | 393 | Chemie (HOH) |
Sequence modifications
B: 348 - 526 (UniProt: C0LT35)
| PDB | External Database | Details |
|---|---|---|
| Ser 524 | Leu 539 | conflict |
| Gly 525 | Asn 540 | conflict |
| Arg 526 | Asp 541 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 70801.0 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 3743.4 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 589.6 | |
| All* | Total formula weight | 75134.0 |
