6FYT
Structure of H1 (A/solomon Islands/3/06) Influenza Hemagglutinin in complex with SD38
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Hemagglutinin | polymer | 330 | 36764.2 | 1 | UniProt (A7Y8I1) Pfam (PF00509) | Influenza A virus (A/Solomon Islands/3/2006(H1N1)) | |
| 2 | B (B) | Hemagglutinin | polymer | 174 | 19956.1 | 1 | UniProt (A7Y8I1) Pfam (PF00509) | Influenza A virus (A/Solomon Islands/3/2006(H1N1)) | |
| 3 | C (I) | Single domain antibody SD38 | polymer | 124 | 13429.2 | 1 | Lama glama (Llama) | ||
| 4 | D, H (C, G) | alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 716.7 | 2 | In PDB GlyTouCan (G63564LA) | |||
| 5 | E, G (D, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 6 | F (E) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 7 | I, J, K (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) |
Sequence modifications
A: 7 - 329 (UniProt: A7Y8I1)
| PDB | External Database | Details |
|---|---|---|
| Asp 8 | Thr 15 | conflict |
| Pro 9 | Tyr 16 | conflict |
| Gly 10 | Ala 17 | conflict |
| Arg 53 | Leu 60 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 70149.5 | |
| Branched | Number of molecules | 5 |
| Total formula weight | 2868.7 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 663.6 | |
| All* | Total formula weight | 73681.8 |
