6FXC

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

This is a non-PDB format compatible entry.

Replaces:  5NG8

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, AB (Aa, Ba)	16S ribosomal RNA	polymer	1539	498060.0	2	GenBank (1248686583)	Staphylococcus aureus
2	B, BB (Ab, Bb)	30S ribosomal protein S2	polymer	226	25929.1	2	UniProt (Q2YXL2) Pfam (PF00318)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
3	C, CB (Ac, Bc)	30S ribosomal protein S3	polymer	202	22684.2	2	UniProt (Q2YYQ2) Pfam (PF07650) Pfam (PF00189)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
4	D, DB (Ad, Bd)	30S ribosomal protein S4	polymer	198	22849.1	2	UniProt (Q2YTH0) Pfam (PF00163) Pfam (PF01479)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
5	E, EB (Ae, Be)	30S ribosomal protein S5	polymer	156	16522.1	2	UniProt (Q2YYL4) Pfam (PF00333) Pfam (PF03719)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
6	F, FB (Af, Bf)	30S ribosomal protein S6	polymer	95	11239.8	2	UniProt (Q2YVJ2) Pfam (PF01250)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
7	G, GB (Ag, Bg)	30S ribosomal protein S7	polymer	152	17181.8	2	UniProt (A0A077VHU6) Pfam (PF00177)	Staphylococcus aureus
8	H, HB (Ah, Bh)	30S ribosomal protein S8	polymer	131	14723.1	2	UniProt (Q2YYL1) Pfam (PF00410)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
9	I, IB (Ai, Bi)	30S ribosomal protein S9	polymer	127	14312.3	2	UniProt (A0A1Q4GY48) Pfam (PF00380)	Staphylococcus aureus
10	J, JB (Aj, Bj)	30S ribosomal protein S10	polymer	97	11009.7	2	UniProt (Q2YYP5) Pfam (PF00338)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
11	K, KB (Ak, Bk)	30S ribosomal protein S11	polymer	114	12047.6	2	UniProt (Q2YYM1) Pfam (PF00411)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
12	L, LB (Al, Bl)	30S ribosomal protein S12	polymer	135	15075.6	2	UniProt (A0A133PZQ5)	Staphylococcus aureus
13	M, MB (Am, Bm)	30S ribosomal protein S13	polymer	121	13747.9	2	UniProt (Q2YYM0) Pfam (PF00416)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
14	N, NB (An, Bn)	30S ribosomal protein S14 type Z	polymer	60	7186.6	2	UniProt (Q2YYL0) Pfam (PF00253)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
15	O, OB (Ao, Bo)	30S ribosomal protein S15	polymer	88	10503.1	2	UniProt (Q2YXP3) Pfam (PF00312)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
16	P, PB (Ap, Bp)	30S ribosomal protein S16	polymer	89	9993.5	2	UniProt (Q2YXH8) Pfam (PF00886)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
17	Q, QB (Aq, Bq)	30S ribosomal protein S17	polymer	80	9366.9	2	UniProt (Q2YYK6) Pfam (PF00366)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
18	R, RB (Ar, Br)	30S ribosomal protein S18	polymer	54	6404.6	2	UniProt (A0A1D4K9U8)	Staphylococcus aureus
19	S, SB (As, Bs)	30S ribosomal protein S19	polymer	80	9205.6	2	UniProt (A0A133PYC3)	Staphylococcus aureus
20	T, TB (At, Bt)	30S ribosomal protein S20	polymer	81	8779.1	2	UniProt (Q2YT41) Pfam (PF01649)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
21	U, UB (Au, Bu)	30S ribosomal protein S21	polymer	52	6241.3	2	UniProt (Q2YT04) Pfam (PF01165)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
22	V, VB (Av, Bv)	Ribosome hibernation promotion factor	polymer	190	22244.9	2	UniProt (Q2YSH7) Pfam (PF02482) Pfam (PF16321)	Staphylococcus aureus (strain bovine RF122 / ET3-1)	HPF
23	W, WB (AA, BA)	23S ribosomal RNA	polymer	2923	946697.6	2	GenBank (743649775)	Staphylococcus aureus
24	X, XB (AB, BB)	5S ribosomal RNA	polymer	115	36974.9	2	GenBank (1269120188)	Staphylococcus aureus
25	Y, YB (AC, BC)	50S ribosomal protein L2	polymer	274	29827.6	2	UniProt (Q2YYP9) Pfam (PF00181) Pfam (PF03947)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
26	Z, ZB (AD, BD)	50S ribosomal protein L3	polymer	215	23199.5	2	UniProt (Q2YYP6) Pfam (PF00297)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
27	AA, AC (AE, BE)	50S ribosomal protein L4	polymer	206	22364.5	2	UniProt (Q2YYP7) Pfam (PF00573)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
28	BA, BC (AF, BF)	50S ribosomal protein L5	polymer	175	19731.9	2	UniProt (Q2YYK9) Pfam (PF00673) Pfam (PF00281)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
29	CA, CC (AG, BG)	50S ribosomal protein L6	polymer	175	19501.2	2	UniProt (Q2YYL2) Pfam (PF00347)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
30	DA, DC (AH, BH)	50S ribosomal protein L13	polymer	145	16359.4	2	UniProt (Q2YYM8) Pfam (PF00572)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
31	EA, EC (AI, BI)	50S ribosomal protein L14	polymer	122	13157.3	2	UniProt (Q2YYK7) Pfam (PF00238)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
32	FA, FC (AJ, BJ)	50S ribosomal protein L15	polymer	146	15628.9	2	UniProt (Q2YYL6) Pfam (PF00828)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
33	GA, GC (AK, BK)	50S ribosomal protein L16	polymer	137	15599.4	2	UniProt (Q2YYQ3) Pfam (PF00252)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
34	HA, HC (AL, BL)	50S ribosomal protein L17	polymer	120	13583.5	2	UniProt (Q2YYM3) Pfam (PF01196)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
35	IA, IC (AM, BM)	50S ribosomal protein L18	polymer	119	13124.1	2	UniProt (W8TRE0) Pfam (PF00861)	Staphylococcus aureus
36	JA, JC (AN, BN)	50S ribosomal protein L19	polymer	114	13104.4	2	UniProt (Q2YXM4) Pfam (PF01245)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
37	KA, KC (AO, BO)	50S ribosomal protein L20	polymer	116	13459.9	2	UniProt (Q2YTB1) Pfam (PF00453)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
38	LA, LC (AP, BP)	50S ribosomal protein L21	polymer	102	11354.1	2	UniProt (Q2YT83) Pfam (PF00829)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
39	MA, MC (AQ, BQ)	50S ribosomal protein L22	polymer	112	12328.4	2	UniProt (Q2YYQ1) Pfam (PF00237)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
40	NA, NC (AR, BR)	50S ribosomal protein L23	polymer	89	10380.1	2	UniProt (Q2YYP8) Pfam (PF00276)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
41	OA, OC (AS, BS)	50S ribosomal protein L24	polymer	103	11316.2	2	UniProt (Q2YYK8) Pfam (PF00467) Pfam (PF17136)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
42	PA, PC (AT, BT)	50S ribosomal protein L25	polymer	94	10462.2	2	UniProt (A0A133Q8Z9)	Staphylococcus aureus	General stress protein CTC
43	QA, QC (AU, BU)	50S ribosomal protein L27	polymer	82	8911.1	2	UniProt (A0A0U1N012)	Staphylococcus aureus
44	RA, RC (AV, BV)	50S ribosomal protein L28	polymer	58	6550.7	2	UniProt (Q2YXJ2) Pfam (PF00830)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
45	SA, SC (AW, BW)	50S ribosomal protein L29	polymer	67	7845.9	2	UniProt (Q2YYN0) Pfam (PF00831)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
46	TA, TC (AX, BX)	50S ribosomal protein L30	polymer	58	6434.5	2	UniProt (Q2YYL5) Pfam (PF00327)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
47	UA, UC (AY, BY)	50S ribosomal protein L31 type B	polymer	59	6909.7	2	UniProt (Q2YUN3) Pfam (PF01197)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
48	VA, VC (AZ, BZ)	50S ribosomal protein L32	polymer	48	5569.6	2	UniProt (A0A1Q8DAT0)	Staphylococcus aureus
49	WA, WC (A1, B1)	50S ribosomal protein L33	polymer	47	5684.6	2	UniProt (A0A077V2P0) Pfam (PF00471)	Staphylococcus aureus
50	XA, XC (A2, B2)	50S ribosomal protein L34	polymer	43	5252.4	2	UniProt (Q2YZB6) Pfam (PF00468)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
51	YA, YC (A3, B3)	50S ribosomal protein L35	polymer	64	7462.0	2	UniProt (Q2YTB0) Pfam (PF01632)	Staphylococcus aureus (strain bovine RF122 / ET3-1)
52	ZA, ZC (A4, B4)	50S ribosomal protein L36	polymer	37	4318.4	2	UniProt (A0A077UGV8) Pfam (PF00444)	Staphylococcus aureus

Contents of the asymmetric unit

Polymers	Number of chains	104
	Total formula weight	4236804.3
All*	Total formula weight	4236804.3

*Water molecules are not included.