Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6FTJ

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AuL2polymer24426570.11UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Oryctolagus cuniculus (Rabbit)
2BuL3polymer39445119.81UniProt (G1TL06)
Pfam (PF00297)
In PDB		Oryctolagus cuniculus (Rabbit)
3CRibosomal protein L4polymer36241115.51UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Oryctolagus cuniculus (Rabbit)
4D60S ribosomal protein L5polymer29234006.31UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB		Oryctolagus cuniculus (Rabbit)
5E60S ribosomal protein L6polymer24828529.81UniProt (G1TG04)
Pfam (PF01159)
Pfam (PF03868)
In PDB		Oryctolagus cuniculus (Rabbit)
6FUl30polymer22526662.81UniProt (G1SV32)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Oryctolagus cuniculus (Rabbit)
7GuL8polymer24127480.61UniProt (G1STW0)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (Rabbit)
8HuL6polymer19021627.21UniProt (G1TX33)
Pfam (PF00347)
UniProt (by SIFTS) (G1SWI6)
In PDB		Oryctolagus cuniculus (Rabbit)
9IRibosomal protein L10 (Predicted)polymer21324511.91UniProt (B7NZQ2)
Pfam (PF00252)
In PDB		Oryctolagus cuniculus (Rabbit)
10JRibosomal protein L11polymer16919270.31UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Oryctolagus cuniculus (Rabbit)
11LeL13polymer21024216.51Oryctolagus cuniculus (Rabbit)
12MRibosomal protein L14polymer13816217.41UniProt (U3KNW6)
Pfam (PF01929)
UniProt (by SIFTS) (G1SZ12)
In PDB		Oryctolagus cuniculus (Rabbit)
13NRibosomal protein L15polymer20324076.11UniProt (G1T0C1)
Pfam (PF00827)
In PDB		Oryctolagus cuniculus (Rabbit)
14OuL13polymer19923248.91Oryctolagus cuniculus (Rabbit)
15PuL22polymer15317757.61UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)
In PDB		Oryctolagus cuniculus (Rabbit)
16QuL14polymer18721457.41Oryctolagus cuniculus (Rabbit)
17ReL19polymer18021613.01Oryctolagus cuniculus (Rabbit)
18SeL20polymer17520696.41Oryctolagus cuniculus (Rabbit)
19TeL21polymer15918478.81UniProt (G1SHQ2)
Pfam (PF01157)
In PDB		Oryctolagus cuniculus (Rabbit)
20URibosomal protein L22polymer9911481.21UniProt (G1TSG1)
Pfam (PF01776)
In PDB		Oryctolagus cuniculus (Rabbit)
21VuL14polymer13113972.41UniProt (G1T6D1)
Pfam (PF00238)
In PDB		Oryctolagus cuniculus (Rabbit)
22WRibosomal protein L24polymer637512.81UniProt (G1SE28)
Pfam (PF01246)
In PDB		Oryctolagus cuniculus (Rabbit)
23XuL23polymer11913856.41UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Oryctolagus cuniculus (Rabbit)
24YRibosomal protein L26polymer13415891.81UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Oryctolagus cuniculus (Rabbit)
25Z60S ribosomal protein L27polymer13515704.61UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Oryctolagus cuniculus (Rabbit)
26auL15polymer14716489.41UniProt (G1SNY0)
Pfam (PF00828)
In PDB		Oryctolagus cuniculus (Rabbit)
27b60S ribosomal protein L29polymer758706.31UniProt (G1TN82)
Pfam (PF01779)
UniProt (by SIFTS) (G1SGR6)
In PDB		Oryctolagus cuniculus (Rabbit)
28ceL30polymer9410496.41Oryctolagus cuniculus (Rabbit)
29deL31polymer10712635.71UniProt (G1SHG0)
Pfam (PF01198)
In PDB		Oryctolagus cuniculus (Rabbit)
30eeL32polymer12815022.01UniProt (G1TUN8)
Pfam (PF01655)
In PDB		Oryctolagus cuniculus (Rabbit)
31feL33polymer10912449.61UniProt (G1SF08)
Pfam (PF01247)
In PDB		Oryctolagus cuniculus (Rabbit)
32geL34polymer11412994.61UniProt (G1U945)
Pfam (PF01199)
UniProt (by SIFTS) (G1TXG5)
In PDB		Oryctolagus cuniculus (Rabbit)
33huL29polymer12214435.41UniProt (G1SIT5)
Pfam (PF00831)
In PDB		Oryctolagus cuniculus (Rabbit)
34i60S ribosomal protein L36polymer10211888.41UniProt (G1TTQ5)
Pfam (PF01158)
In PDB		Oryctolagus cuniculus (Rabbit)
35jRibosomal protein L37polymer8610090.91UniProt (U3KPD5)
Pfam (PF01907)
In PDB		Oryctolagus cuniculus (Rabbit)
36keL38polymer698107.81Oryctolagus cuniculus (Rabbit)
37leL39polymer506295.61UniProt (G1SYU7)
Pfam (PF00832)
In PDB		Oryctolagus cuniculus (Rabbit)
38meL40polymer526199.61Oryctolagus cuniculus (Rabbit)
39n60s ribosomal protein l41polymer233213.11UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB		Oryctolagus cuniculus (Rabbit)
40oeL42polymer10412198.61UniProt (G1T040)
Pfam (PF00935)
In PDB		Oryctolagus cuniculus (Rabbit)
41pRibosomal protein L37apolymer9110168.21UniProt (G1SY53)
Pfam (PF01780)
In PDB		Oryctolagus cuniculus (Rabbit)
42reL28polymer13615652.41UniProt (G1U7L1)
Pfam (PF01778)
In PDB		Oryctolagus cuniculus (Rabbit)
43s60S acidic ribosomal protein P0polymer19821747.31UniProt (G1U6N2)
In PDB		Oryctolagus cuniculus (Rabbit)
44tRibosomal protein L12polymer16317689.51UniProt (G1SMR7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Oryctolagus cuniculus (Rabbit)
45u28S rRNApolymer36621186579.51Oryctolagus cuniculus (Rabbit)
46v5S ribosomal RNApolymer12038691.91Oryctolagus cuniculus (Rabbit)
47w5.8S ribosomal RNApolymer15650143.61Oryctolagus cuniculus (Rabbit)
48xProtein transport protein Sec61 subunit alpha isoform 1polymer42647239.71UniProt (P38377)
Pfam (PF10559)
Pfam (PF00344)
In PDB		Canis lupus familiaris (Dog)Sec61 alpha-1
49yProtein transport protein Sec61 subunit gammapolymer627019.51UniProt (P60058)
Pfam (PF00584)
In PDB		Canis lupus familiaris (Dog)
50zProtein transport protein Sec61 subunit betapolymer293265.01UniProt (P60467)
Pfam (PF03911)
In PDB		Canis lupus familiaris (Dog)
511Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1polymer16217642.61UniProt (E2RQ08)
In PDB		Canis lupus familiaris (Dog)Ribophorin I,RPN-I,Ribophorin-1
522TMEM258polymer605124.31Canis lupus familiaris (Dog)
533Oligosaccharyltransferase complex subunit OSTCpolymer12013375.91UniProt (P86218)
Pfam (PF04756)
In PDB		Canis lupus familiaris (Dog)
544OST4polymer343809.61Canis lupus familiaris (Dog)
555Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3Apolymer69679642.31UniProt (F1PJP5)
Pfam (PF02516)
Pfam (PF22627)
In PDB		Canis lupus familiaris (Dog)STT3-A
566DAD1polymer978273.21Canis lupus familiaris (Dog)
577OST48polymer252145.61Canis lupus familiaris (Dog)
588RPN2polymer806826.41Canis lupus familiaris (Dog)
59Kalpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1397.21In PDB
GlyTouCan (G83582BK)
60u, B, I, v, P...MAGNESIUM IONnon-polymer24.3159Chemie (MG)
61g, j, m, o, pZINC IONnon-polymer65.45Chemie (ZN)
625[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]methyl-[oxidanyl-[(2~{Z},6~{Z},10~{Z})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraenoxy]phosphoryl]oxy-phosphinic acidnon-polymer651.71Chemie (9UB)
Sequence modifications
C: 2 - 363 (UniProt: G1SVW5)
PDBExternal DatabaseDetails
Lys 362Ser 376conflict
Ser 363Asp 377conflict
F: 26 - 250 (UniProt: G1SV32)
PDBExternal DatabaseDetails
Ala 175Thr 174conflict
Gly 185Asn 184conflict
Arg 202His 201conflict
Glu 233Gly 232conflict
G: 26 - 266 (UniProt: G1STW0)
PDBExternal DatabaseDetails
Gly 191Cys 167conflict
P: 2 - 154 (UniProt: G1TVT6)
PDBExternal DatabaseDetails
Gln 54Lys 57conflict
U: 17 - 115 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Gly 32Arg 32conflict
Ala 36Glu 36conflict
Phe 39Ser 39conflict
Gly 54Arg 54conflict
Val 60Ala 60conflict
Arg 97His 97conflict
x: 5 - 465 (UniProt: P38377)
PDBExternal DatabaseDetails
-Thr 134deletion
-Gly 135deletion
-Met 136deletion
-Tyr 137deletion
-Gly 138deletion
-Asp 139deletion
-Pro 140deletion
-Ser 141deletion
-Glu 142deletion
-Met 143deletion
-Gly 144deletion
Ser 145Ala 145conflict
-Ser 313deletion
-Gly 314deletion
-Asn 315deletion
-Leu 316deletion
-Leu 317deletion
-Val 318deletion
-Ser 319deletion
-Leu 320deletion
-Leu 321deletion
-Gly 322deletion
-Thr 323deletion
-Trp 324deletion
-Ser 325deletion
-Asp 326deletion
-Thr 327deletion
-Ser 328deletion
-Ser 329deletion
-Gly 330deletion
-Gly 331deletion
-Pro 332deletion
-Ala 333deletion
-Arg 334deletion
-Ala 335deletion
-Tyr 336deletion
1: 438 - 573 (UniProt: E2RQ08)
1: 582 - 607 (PDB: 6FTJ)
5: 1 - 696 (UniProt: F1PJP5)
PDBExternal DatabaseDetails
Leu 88Ile 88conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2257335.3
BranchedNumber of molecules1
Total formula weight1397.2
Non-Polymers*Number of molecules165
Total formula weight4843.2
All*Total formula weight2263575.7
*Water molecules are not included.

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon