Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 2 | RNA (5'-R(P*AP*AP*AP*AP*UP*UP*UP*AP*AP*AP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | polymer | 23 | 7158.1 | 1 | Saccharomyces cerevisiae | ||
2 | AA | Exosome complex component RRP45 | polymer | 303 | 33799.6 | 1 | UniProt (Q05636) Pfam (PF01138) Pfam (PF03725) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ribosomal RNA-processing protein 45 |
3 | BB | Exosome complex component SKI6 | polymer | 248 | 27794.9 | 1 | UniProt (P46948) Pfam (PF01138) Pfam (PF03725) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Extracellular mutant protein 20,Ribosomal RNA-processing protein 41,Superkiller protein 6 |
4 | CC | Exosome complex component RRP43 | polymer | 393 | 43977.8 | 1 | UniProt (P25359) Pfam (PF01138) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ribosomal RNA-processing protein 43 |
5 | DD | Exosome complex component RRP46 | polymer | 245 | 26914.0 | 1 | UniProt (P53256) Pfam (PF01138) Pfam (PF03725) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ribosomal RNA-processing protein 46 |
6 | EE | Exosome complex component RRP42 | polymer | 267 | 29294.4 | 1 | UniProt (Q12277) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ribosomal RNA-processing protein 42 |
7 | FF | Exosome complex component MTR3 | polymer | 250 | 27559.9 | 1 | UniProt (P48240) Pfam (PF01138) In PDB | Saccharomyces cerevisiae (Baker's yeast) | mRNA transport regulator 3 |
8 | GG | Exosome complex component RRP40 | polymer | 242 | 26778.6 | 1 | UniProt (Q08285) Pfam (PF21262) Pfam (PF15985) Pfam (PF18311) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ribosomal RNA-processing protein 40 |
9 | HH | Exosome complex component RRP4 | polymer | 361 | 39714.4 | 1 | UniProt (P38792) Pfam (PF14382) Pfam (PF21266) Pfam (PF15985) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ribosomal RNA-processing protein 4 |
10 | II | Exosome complex component CSL4 | polymer | 301 | 32805.6 | 1 | UniProt (P53859) Pfam (PF21551) Pfam (PF10447) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | CEP1 synthetic lethal protein 4 |
11 | JJ | Exosome complex exonuclease DIS3 | polymer | 1003 | 113983.9 | 1 | UniProt (Q08162) Pfam (PF13638) Pfam (PF17216) Pfam (PF17849) Pfam (PF00773) Pfam (PF17215) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Chromosome disjunction protein 3,Ribosomal RNA-processing protein 44 |
12 | KK | Exosome complex exonuclease RRP6 | polymer | 733 | 84159.6 | 1 | UniProt (Q12149) Pfam (PF08066) Pfam (PF01612) Pfam (PF00570) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Ribosomal RNA-processing protein 6 |
13 | LL | Exosome complex protein LRP1 | polymer | 184 | 21086.3 | 1 | UniProt (P38801) Pfam (PF04000) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Like an rRNA processing protein 1,Yeast C1D domain-containing protein,rRNA processing protein 47 |
14 | MM | ATP-dependent RNA helicase DOB1 | polymer | 1073 | 122260.1 | 1 | UniProt (P47047) Pfam (PF00270) Pfam (PF00271) Pfam (PF21408) Pfam (PF13234) Pfam (PF08148) In PDB | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | mRNA transport regulator MTR4 |
15 | NN | M-phase phosphoprotein 6 homolog,M-phase phosphoprotein 6 homolog,Nuclear exosome-associated RNA binding protein,M-phase phosphoprotein 6 homolog | polymer | 40 | 4101.7 | 1 | UniProt (P53725) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Exosome-associated RNA-binding protein MPP6,Exosome-associated RNA-binding protein MPP6,Exosome-associated RNA-binding protein MPP6 |
Sequence modifications
BB: 1 - 246 (UniProt: P46948)
CC: 2 - 394 (UniProt: P25359)
DD: 1 - 223 (UniProt: P53256)
EE: 1 - 265 (UniProt: Q12277)
FF: 1 - 250 (UniProt: P48240)
GG: 1 - 240 (UniProt: Q08285)
HH: 1 - 359 (UniProt: P38792)
II: 1 - 292 (UniProt: P53859)
JJ: 1 - 1001 (UniProt: Q08162)
KK: 1 - 733 (UniProt: Q12149)
MM: 1 - 1073 (UniProt: P47047)
NN: 1 - 11 (PDB: 6FSZ)
NN: 90 - 118 (UniProt: P53725)
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ser 102 | Ala 102 | conflict |
Met 363 | Val 363 | conflict |
PDB | External Database | Details |
---|---|---|
Gly -21 | - | expression tag |
His -20 | - | expression tag |
Gly -19 | - | expression tag |
Asn -18 | - | expression tag |
Asn -17 | - | expression tag |
Lys -16 | - | expression tag |
Glu -15 | - | expression tag |
Pro -14 | - | expression tag |
Asn -13 | - | expression tag |
Thr -12 | - | expression tag |
Lys -11 | - | expression tag |
Asn -10 | - | expression tag |
Arg -9 | - | expression tag |
Leu -8 | - | expression tag |
Asp -7 | - | expression tag |
Ser -6 | - | expression tag |
Ala -5 | - | expression tag |
Glu -4 | - | expression tag |
Lys -3 | - | expression tag |
Lys -2 | - | expression tag |
Lys -1 | - | expression tag |
Lys 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
His 0 | - | expression tag |
Ile 138 | Val 138 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 75 | Thr 75 | conflict |
Thr 161 | Met 161 | conflict |
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
His 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Arg -1 | - | expression tag |
Ser 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met -8 | - | initiating methionine |
Lys -7 | - | expression tag |
His -6 | - | expression tag |
His -5 | - | expression tag |
His -4 | - | expression tag |
His -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
Pro 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
Ala 0 | - | expression tag |
Asn 171 | Asp 171 | conflict |
Asn 551 | Asp 551 | conflict |
PDB | External Database | Details |
---|---|---|
Asn 296 | Asp 296 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Met 80 | Val 80 | conflict |
NN: 90 - 118 (UniProt: P53725)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 15 |
Total formula weight | 641388.9 | |
All* | Total formula weight | 641388.9 |