6FKY
Crystal structure of zebrafish Sirtuin 5 in complex with 3-(benzylthio)succinyl-CPS1 peptide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | NAD-dependent protein deacylase sirtuin-5, mitochondrial | polymer | 284 | 31495.0 | 2 | UniProt (Q6DHI5) Pfam (PF02146) In PDB | Danio rerio (Zebrafish) | Regulatory protein SIR2 homolog 5 |
2 | C, I | 3(R)-(phenylthio)succinyl-CPS1 peptide | polymer | 8 | 969.1 | 2 | Homo sapiens | ||
3 | A, B | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
4 | B | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) | |||
5 | B | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
6 | B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
7 | C | (2~{R})-2-(phenylmethylsulfanyl)butanedioic acid | non-polymer | 240.3 | 1 | Chemie (E9N) | |||
8 | I | (2~{S})-2-(phenylmethylsulfanyl)butanedioic acid | non-polymer | 240.3 | 1 | Chemie (DZK) | |||
9 | water | water | 18.0 | 55 | Chemie (HOH) |
Sequence modifications
A, B: 28 - 305 (UniProt: Q6DHI5)
PDB | External Database | Details |
---|---|---|
Gly 22 | - | expression tag |
Ile 23 | - | expression tag |
Asp 24 | - | expression tag |
Pro 25 | - | expression tag |
Phe 26 | - | expression tag |
Thr 27 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 64928.2 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 934.7 | |
All* | Total formula weight | 65863.0 |