6FKA
Crystal structure of N2C/D282C stabilized opsin bound to RS11
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Rhodopsin | polymer | 349 | 39034.6 | 1 | UniProt (P02699) Pfam (PF10413) Pfam (PF00001) In PDB | Bos taurus (Bovine) | |
| 2 | B | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 3 | A | PALMITIC ACID | non-polymer | 256.4 | 1 | Chemie (PLM) | |||
| 4 | A | octyl beta-D-glucopyranoside | non-polymer | 292.4 | 5 | Chemie (BOG) | |||
| 5 | A | (2~{S})-2-(3,4-dichlorophenyl)-3-methyl-1-spiro[1,3-benzodioxole-2,4'-piperidine]-1'-yl-butan-1-one | non-polymer | 420.3 | 1 | Chemie (DN5) | |||
| 6 | water | water | 18.0 | 19 | Chemie (HOH) |
Sequence modifications
A: 1 - 348 (UniProt: P02699)
| PDB | External Database | Details |
|---|---|---|
| Ace 0 | - | acetylation |
| Cys 2 | Asn 2 | conflict |
| Cys 282 | Asp 282 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 39034.6 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 910.8 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 2138.6 | |
| All* | Total formula weight | 42084.0 |
