6FDK
Structure of Chlamydia trachomatis effector protein Cdu1 bound to ubiquitin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Deubiquitinase and deneddylase Dub1 | polymer | 266 | 30454.2 | 1 | UniProt (B0B9A0) Pfam (PF02902) | Chlamydia trachomatis 434/Bu | ChlaDub1 |
| 2 | B (B) | Polyubiquitin-B | polymer | 75 | 8519.8 | 1 | UniProt (P0CG47) Pfam (PF00240) | Homo sapiens (human) | |
| 3 | C (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 4 | D (A) | prop-2-en-1-amine | non-polymer | 57.1 | 1 | Chemie (AYE) | |||
| 5 | E, F (A, B) | water | water | 18.0 | 423 | Chemie (HOH) |
Sequence modifications
A: 155 - 401 (UniProt: B0B9A0)
| PDB | External Database | Details |
|---|---|---|
| Met 136 | - | initiating methionine |
| Lys 137 | - | expression tag |
| His 138 | - | expression tag |
| His 139 | - | expression tag |
| His 140 | - | expression tag |
| His 141 | - | expression tag |
| His 142 | - | expression tag |
| His 143 | - | expression tag |
| Ser 144 | - | expression tag |
| Ala 145 | - | expression tag |
| Gly 146 | - | expression tag |
| Leu 147 | - | expression tag |
| Glu 148 | - | expression tag |
| Val 149 | - | expression tag |
| Leu 150 | - | expression tag |
| Phe 151 | - | expression tag |
| Gln 152 | - | expression tag |
| Gly 153 | - | expression tag |
| Pro 154 | - | expression tag |
| Ala 174 | Cys 174 | engineered mutation |
| Ser 226 | Cys 226 | engineered mutation |
| Ala 386 | Cys 386 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 38973.9 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 92.5 | |
| All* | Total formula weight | 39066.5 |
