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6ETW

Crystal structure of KDM4D with tetrazolhydrazide compound 3

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Lysine-specific demethylase 4Dpolymer34239491.81UniProt (Q6B0I6)
Pfam (PF02375)
Pfam (PF02373)
Homo sapiens (Human)JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
4D, E, F, G
(A)
1,2-ETHANEDIOLnon-polymer62.14Chemie (EDO)
5H, I
(A)
SULFATE IONnon-polymer96.12Chemie (SO4)
6J
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
7K
(A)
[4-(2~{H}-1,2,3,4-tetrazol-5-yl)butanoylamino]azaniumnon-polymer171.21Chemie (BX5)
8L
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
9M
(A)
waterwater18.0452Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight39491.8
Non-Polymers*Number of molecules11
Total formula weight863.2
All*Total formula weight40355.0
*Water molecules are not included.

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PDB entries from 2026-01-14

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