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6ETV

Crystal structure of KDM4D with tetrazolhydrazide compound 2

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Lysine-specific demethylase 4Dpolymer34239491.81UniProt (Q6B0I6)
Pfam (PF02375)
Pfam (PF02373)
Homo sapiens (Human)JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
4D
(A)
SODIUM IONnon-polymer23.01Chemie (NA)
5E, F, G, H, I...
(A)
1,2-ETHANEDIOLnon-polymer62.17Chemie (EDO)
6L
(A)
SULFATE IONnon-polymer96.11Chemie (SO4)
7M
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
8N
(A)
[3-(2~{H}-1,2,3,4-tetrazol-5-yl)propanoylamino]azaniumnon-polymer157.21Chemie (BXE)
9O
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
10P
(A)
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACIDnon-polymer238.31Chemie (EPE)
11Q
(A)
waterwater18.0474Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight39491.8
Non-Polymers*Number of molecules15
Total formula weight1200.6
All*Total formula weight40692.4
*Water molecules are not included.

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PDB entries from 2025-07-16

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