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6ETV

Crystal structure of KDM4D with tetrazolhydrazide compound 2

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 402
ChainResidue
AASN128
ALYS186

site_idAC3
Number of Residues7
Detailsbinding site for residue NA A 403
ChainResidue
AHOH650
AHOH836
AHOH846
AHOH846
AASN17
AASN262
AHOH612

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 404
ChainResidue
AARG123
ALYS124
ALYS127
AASN128
AHOH826

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 405
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH598
AHOH716

site_idAC6
Number of Residues3
Detailsbinding site for residue EDO A 406
ChainResidue
ATHR252
AARG263
AHOH696

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 407
ChainResidue
ALYS109
AGLN111
AASN132
ATRP185
ALYS186
AHOH515

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
ASER80
ATHR87
ACYS168
ALYS305
AHOH516
AHOH529
AHOH924

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO A 409
ChainResidue
APHE118
AARG263
AILE264
ATHR265
AHOH570

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 410
ChainResidue
AGLU27
ATYR37
AHOH548
AHOH667
AHOH860

site_idAD2
Number of Residues9
Detailsbinding site for residue SO4 A 411
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH531
AHOH534
AHOH549
AHOH798
AHOH822

site_idAD3
Number of Residues5
Detailsbinding site for residue NI A 412
ChainResidue
AHIS192
AGLU194
AHIS280
ABXE413
AHOH589

site_idAD4
Number of Residues13
Detailsbinding site for residue BXE A 413
ChainResidue
ATYR136
ATYR181
AHIS192
AGLU194
ASER200
AASN202
ALYS210
AHIS280
ANI412
AHOH503
AHOH554
AHOH589
AHOH712

site_idAD5
Number of Residues6
Detailsbinding site for residue GOL A 414
ChainResidue
AARG102
AHIS103
AASN106
AHOH596
AHOH662
AHOH829

site_idAD6
Number of Residues20
Detailsbinding site for residue EPE A 415
ChainResidue
AHOH930
AHOH953
AHOH970
AHOH971
AHOH974
AMET19
AILE20
ATYR37
AGLN41
ALYS255
AGLU256
AHOH511
AHOH533
AHOH573
AHOH579
AHOH654
AHOH825
AHOH878
AHOH898
AHOH911

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ALYS245
ATYR136
AASN202
ALYS210

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
AHIS244
ACYS310
ACYS312
ACYS238

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

219869

PDB entries from 2024-05-15

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