6EPK
CRYSTAL STRUCTURE OF THE PRECURSOR MEMBRANE PROTEIN-ENVELOPE PROTEIN HETERODIMER FROM THE YELLOW FEVER VIRUS
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D | Envelope protein E | polymer | 427 | 46323.9 | 2 | UniProt (Q6DV88) Pfam (PF00869) Pfam (PF02832) In PDB | Yellow fever virus | |
| 2 | B, E | Precursor Membrane Protein | polymer | 89 | 10194.5 | 2 | UniProt (Q6DV88) Pfam (PF01570) UniProt (by SIFTS) (P03314) In PDB | Yellow fever virus | |
| 3 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | F, H | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 2 | In PDB GlyTouCan (G82348BZ) | |||
| 5 | G | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 6 | D, A, E, B | SULFATE ION | non-polymer | 96.1 | 23 | Chemie (SO4) | |||
| 7 | D, A, B | GLYCEROL | non-polymer | 92.1 | 13 | Chemie (GOL) | |||
| 8 | water | water | 18.0 | 205 | Chemie (HOH) |
Sequence modifications
A, D: 1 - 392 (UniProt: Q6DV88)
| PDB | External Database | Details |
|---|---|---|
| Asp 393 | - | expression tag |
| Asp 394 | - | expression tag |
| Asp 395 | - | expression tag |
| Asp 396 | - | expression tag |
| Lys 397 | - | expression tag |
| Ala 398 | - | expression tag |
| Gly 399 | - | expression tag |
| Trp 400 | - | expression tag |
| Ser 401 | - | expression tag |
| His 402 | - | expression tag |
| Pro 403 | - | expression tag |
| Gln 404 | - | expression tag |
| Phe 405 | - | expression tag |
| Glu 406 | - | expression tag |
| Lys 407 | - | expression tag |
| Gly 408 | - | expression tag |
| Gly 409 | - | expression tag |
| Gly 410 | - | expression tag |
| Ser 411 | - | expression tag |
| Gly 412 | - | expression tag |
| Gly 413 | - | expression tag |
| Gly 414 | - | expression tag |
| Ser 415 | - | expression tag |
| Gly 416 | - | expression tag |
| Gly 417 | - | expression tag |
| Gly 418 | - | expression tag |
| Ser 419 | - | expression tag |
| Trp 420 | - | expression tag |
| Ser 421 | - | expression tag |
| His 422 | - | expression tag |
| Pro 423 | - | expression tag |
| Gln 424 | - | expression tag |
| Phe 425 | - | expression tag |
| Glu 426 | - | expression tag |
| Lys 427 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 113036.8 | |
| Branched | Number of molecules | 4 |
| Total formula weight | 3124.9 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 3406.7 | |
| All* | Total formula weight | 119568.3 |
