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6ENX

Zebrafish Sirt5 in complex with stalled bicyclic intermediate of inhibitory compound 10

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
NAD-dependent protein deacylase sirtuin-5, mitochondrialpolymer27130053.51UniProt (Q6DHI5)
Pfam (PF02146)
Danio rerio (Zebrafish)Regulatory protein SIR2 homolog 5
2B
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
3C
(A)
DIMETHYL SULFOXIDEnon-polymer78.11Chemie (DMS)
4D
(A)
4-[(2~{R},3~{a}~{R},5~{R},6~{R},6~{a}~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2-[[(5~{S})-6-[[(2~{S})-3-(1~{H}-indol-3-yl)-1-oxidanylidene-1-(propan-2-ylamino)propan-2-yl]amino]-6-oxidanylidene-5-(phenylmethoxycarbonylamino)hexyl]amino]-6-oxidanyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]oxathiol-2-yl]butanoic acidnon-polymer1179.11Chemie (BJW)
5E
(A)
waterwater18.0173Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight30053.5
Non-Polymers*Number of molecules3
Total formula weight1322.6
All*Total formula weight31376.1
*Water molecules are not included.

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PDB entries from 2026-01-14

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