6EJ7
Human Xylosyltransferase 1 in complex with UDP-xylose and peptide QEEEGAGGGQGG
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Xylosyltransferase 1 | polymer | 751 | 86122.0 | 1 | UniProt (Q86Y38) Pfam (PF02485) Pfam (PF12529) | Homo sapiens (Human) | Peptide O-xylosyltransferase 1,Xylosyltransferase I,XylT-I |
| 2 | B (B) | Protein AMBP | polymer | 12 | 1075.0 | 1 | UniProt (P02760) | Homo sapiens | |
| 3 | C (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 4 | D (A) | URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE | non-polymer | 536.3 | 1 | Chemie (UDX) PubChem (20776704) PubChem (23724459) PubChem (46936197) PubChem (89195901) PubChem (101642724) PubChem (102476153) PubChem (118705350) PubChem (134727661) PubChem (157398751) PubChem (168006998) PubChem (171611961) PubChem (23724466) PubChem (19235) PubChem (439349) PubChem (101680907) PubChem (1165) PubChem (154572856) PubChem (172642273) PubChem (439179) PubChem (644105) PubChem (9988606) PubChem (11272619) PubChem (11857306) | |||
| 5 | E (A) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) PubChem (923) | |||
| 6 | F, G, H, I, J... (A) | PHOSPHATE ION | non-polymer | 95.0 | 9 | Chemie (PO4) PubChem (1061) | |||
| 7 | O, P, Q, R (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 8 | S, T (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) PubChem (8117) | |||
| 9 | U, V (A, B) | water | water | 18.0 | 366 | Chemie (HOH) |
Sequence modifications
A: 232 - 959 (UniProt: Q86Y38)
B: 210 - 221 (UniProt: P02760)
| PDB | External Database | Details |
|---|---|---|
| Ala 209 | - | expression tag |
| Pro 210 | - | expression tag |
| Leu 211 | - | expression tag |
| Val 212 | - | expression tag |
| His 213 | - | expression tag |
| His 214 | - | expression tag |
| His 215 | - | expression tag |
| His 216 | - | expression tag |
| His 217 | - | expression tag |
| His 218 | - | expression tag |
| Ala 219 | - | expression tag |
| Leu 220 | - | expression tag |
| Asp 221 | - | expression tag |
| Glu 222 | - | expression tag |
| Asn 223 | - | expression tag |
| Leu 224 | - | expression tag |
| Tyr 225 | - | expression tag |
| Phe 226 | - | expression tag |
| Gln 227 | - | expression tag |
| Gly 228 | - | expression tag |
| Ala 229 | - | expression tag |
| Leu 230 | - | expression tag |
| Ala 231 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ala 215 | Ser 215 | engineered mutation |
| Gly 220 | Leu 220 | engineered mutation |
| Gly 221 | Val 221 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 87197.1 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 2095.7 | |
| All* | Total formula weight | 89292.8 |
