6EJ7
Human Xylosyltransferase 1 in complex with UDP-xylose and peptide QEEEGAGGGQGG
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I04-1 |
| Synchrotron site | Diamond |
| Beamline | I04-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-01-21 |
| Detector | DECTRIS PILATUS 6M-F |
| Wavelength(s) | 0.9282 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 67.460, 86.890, 152.910 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 76.455 - 2.000 |
| R-factor | 0.2001 |
| Rwork | 0.199 |
| R-free | 0.22980 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2gak |
| RMSD bond length | 0.003 |
| RMSD bond angle | 0.556 |
| Data reduction software | xia2 |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 86.890 | 86.890 | 2.050 |
| High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
| Rmerge | 0.183 | 0.035 | 1.785 |
| Rmeas | 0.198 | 0.038 | 1.937 |
| Rpim | 0.077 | 0.014 | 0.745 |
| Total number of observations | 400825 | ||
| Number of reflections | 61497 | 805 | 4462 |
| <I/σ(I)> | 9 | ||
| Completeness [%] | 99.9 | 99.9 | 100 |
| Redundancy | 6.5 | 6 | 6.7 |
| CC(1/2) | 0.996 | 0.999 | 0.649 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 55-65% Morpheus precipitant mix 2 (PEG8000 and ethylene glycol), 0.1M Bicine/Tris buffer at pH 7.5 0.1 M of Morpheus NPS mix. |
