6DZL
Ebola virus Makona variant GP (mucin-deleted) in complex with pan-ebolavirus human antibody ADI-15878 Fab
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Ebola virus Makona GP1 | polymer | 321 | 35517.8 | 3 | UniProt (A0A0F7IM40) Pfam (PF01611) UniProt (by SIFTS) (P87666) In PDB | Zaire ebolavirus (ZEBOV) | |
2 | D, E, F | Ebola virus Makona GP2 | polymer | 166 | 18334.4 | 3 | UniProt (P87666) Pfam (PF22307) In PDB | Zaire ebolavirus (ZEBOV) | GP1,2,GP |
3 | J, K, L | Fv domain of ADI-15878 Fab light chain | polymer | 106 | 11333.5 | 3 | Homo sapiens | ||
4 | G, H, I | Fv domain of ADI-15878 Fab heavy chain | polymer | 121 | 13171.7 | 3 | Homo sapiens | ||
5 | M, O, Q | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
6 | N, P, R | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 3 | In PDB GlyTouCan (G56014GC) | |||
7 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) |
Sequence modifications
A, B, C: 32 - 311 (UniProt: A0A0F7IM40)
D, E, F: 504 - 629 (UniProt: P87666)
PDB | External Database | Details |
---|---|---|
Asn 312 | - | expression tag |
Asn 313 | - | expression tag |
Asn 314 | - | expression tag |
Thr 315 | - | expression tag |
His 316 | - | expression tag |
His 317 | - | expression tag |
Gln 318 | - | expression tag |
Asp 319 | - | expression tag |
Thr 320 | - | expression tag |
Gly 321 | - | expression tag |
Glu 322 | - | expression tag |
Glu 323 | - | expression tag |
Ser 324 | - | expression tag |
Ala 325 | - | expression tag |
Ser 326 | - | expression tag |
Ser 327 | - | expression tag |
Gly 328 | - | expression tag |
Lys 329 | - | expression tag |
Leu 330 | - | expression tag |
Gly 331 | - | expression tag |
Leu 332 | - | expression tag |
Ile 333 | - | expression tag |
Thr 334 | - | expression tag |
Asn 335 | - | expression tag |
Thr 336 | - | expression tag |
Ile 337 | - | expression tag |
Ala 338 | - | expression tag |
Gly 339 | - | expression tag |
Val 340 | - | expression tag |
Ala 341 | - | expression tag |
Gly 342 | - | expression tag |
Leu 343 | - | expression tag |
Ile 344 | - | expression tag |
Thr 345 | - | expression tag |
Gly 346 | - | expression tag |
Gly 347 | - | expression tag |
Arg 348 | - | expression tag |
Arg 349 | - | expression tag |
Thr 350 | - | expression tag |
Arg 351 | - | expression tag |
Arg 352 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Glu 502 | - | expression tag |
Val 503 | - | expression tag |
Phe 517 | Tyr 517 | conflict |
Val 630 | - | expression tag |
Glu 631 | - | expression tag |
Val 632 | - | expression tag |
Asp 633 | - | expression tag |
Asp 634 | - | expression tag |
Asp 635 | - | expression tag |
Asp 636 | - | expression tag |
Lys 637 | - | expression tag |
Ala 638 | - | expression tag |
Gly 639 | - | expression tag |
Trp 640 | - | expression tag |
Ser 641 | - | expression tag |
His 642 | - | expression tag |
Pro 643 | - | expression tag |
Gln 644 | - | expression tag |
Phe 645 | - | expression tag |
Glu 646 | - | expression tag |
Lys 647 | - | expression tag |
Gly 648 | - | expression tag |
Gly 649 | - | expression tag |
Gly 650 | - | expression tag |
Ser 651 | - | expression tag |
Gly 652 | - | expression tag |
Gly 653 | - | expression tag |
Gly 654 | - | expression tag |
Ser 655 | - | expression tag |
Gly 656 | - | expression tag |
Gly 657 | - | expression tag |
Gly 658 | - | expression tag |
Ser 659 | - | expression tag |
Trp 660 | - | expression tag |
Ser 661 | - | expression tag |
His 662 | - | expression tag |
Pro 663 | - | expression tag |
Gln 664 | - | expression tag |
Phe 665 | - | expression tag |
Glu 666 | - | expression tag |
Lys 667 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 235072.0 | |
Branched | Number of molecules | 6 |
Total formula weight | 4492.1 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1327.2 | |
All* | Total formula weight | 240891.3 |