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6DPL

Crystal Structure of Bacillus Halodurans Ribonuclease H1 K196A in Complex with an RNA/DNA Hybrid: Reaction in 10 mM Mg2+ and 200 mM Rb+ for 720 s at 21 C

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Ribonuclease Hpolymer14216272.41UniProt (Q9KEI9)Bacillus haloduransRNase H
2B
(B)
5'-R(*AP*CP*AP*U)-3' portion of cleaved RNA 5'-R(*AP*CP*AP*UP*CP*G)-3'polymer41224.81synthetic construct
3C
(b)
5'-R(P*CP*G)-3' portion of cleaved RNA (5'-R(*AP*CP*AP*UP*CP*G)-3')polymer2605.41synthetic construct
4D
(C)
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3')polymer61824.21synthetic construct
5E, F
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6G, H, I, J, Y...
(A, B, C)
RUBIDIUM IONnon-polymer85.56Chemie (RB)
7K, L, M
(A)
CHLORIDE IONnon-polymer35.53Chemie (CL)
8N, O, P, Q, T...
(A)
GLYCEROLnon-polymer92.16Chemie (GOL)
9R, S, V, W, X
(A)
1,2-ETHANEDIOLnon-polymer62.15Chemie (EDO)
10AA, BA, CA, DA
(A, B, b, C)
waterwater18.0169Chemie (HOH)
Sequence modifications
A: 59 - 196 (UniProt: Q9KEI9)
PDBExternal DatabaseDetails
Gly 55-expression tag
Ser 56-expression tag
His 57-expression tag
Met 58-expression tag
Ala 196Lys 196engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight19926.8
Non-Polymers*Number of molecules22
Total formula weight1530.7
All*Total formula weight21457.5
*Water molecules are not included.

239149

PDB entries from 2025-07-23

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