Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6DPI

Crystal Structure of Bacillus Halodurans Ribonuclease H1 K196A in Complex with an RNA/DNA Hybrid: Reaction in 10 mM Mg2+ and 200 mM Rb+ for 40 s at 21 C

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Ribonuclease Hpolymer14216272.41UniProt (Q9KEI9)Bacillus haloduransRNase H
2B
(B)
5'-R(*AP*CP*AP*U)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3')polymer41224.81synthetic construct
3C
(b)
5'-R(P*CP*G)-3' portion of intact RNA (5'-R(*AP*CP*AP*UP*CP*G)-3')polymer2605.41synthetic construct
4D
(C)
DNA (5'-D(*CP*GP*AP*TP*GP*T)-3')polymer61824.21synthetic construct
5E, F
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6G, H, R
(A, C)
RUBIDIUM IONnon-polymer85.53Chemie (RB)
7I, J, K
(A)
CHLORIDE IONnon-polymer35.53Chemie (CL)
8L, M, N, O
(A)
GLYCEROLnon-polymer92.14Chemie (GOL)
9P, Q, S
(A, C)
1,2-ETHANEDIOLnon-polymer62.13Chemie (EDO)
10T, U, V, W
(A, B, b, C)
waterwater18.0203Chemie (HOH)
Sequence modifications
A: 59 - 196 (UniProt: Q9KEI9)
PDBExternal DatabaseDetails
Gly 55-expression tag
Ser 56-expression tag
His 57-expression tag
Met 58-expression tag
Ala 196Lys 196engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight19926.8
Non-Polymers*Number of molecules15
Total formula weight966.0
All*Total formula weight20892.8
*Water molecules are not included.

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon