Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6DNC

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		16S ribosomal RNApolymer1539498725.41GenBank (1338015391)Escherichia coli
2B
(B)		23S ribosomal RNApolymer2903941321.31GenBank (1036415628)Escherichia coli
3C
(C)		5S ribosomal RNApolymer12038813.11GenBank (1370526515)Escherichia coli
4D, LA
(D, LA)		tRNA(fMet)polymer7724802.82GenBank (1384458579)Escherichia coli
5E
(E)		50S ribosomal protein L1polymer23424765.71UniProt (B7MIX0)
Pfam (PF00687)
UniProt (by SIFTS) (P0A7L0)		Escherichia coli
6F
(F)		50S ribosomal protein L2polymer27329923.61UniProt (B7MCT2)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60422)		Escherichia coli
7G
(G)		50S ribosomal protein L3polymer20922277.51UniProt (B7MCT5)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)		Escherichia coli
8H
(H)		50S ribosomal protein L4polymer20122121.61UniProt (B7MCT4)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)		Escherichia coli
9I
(I)		50S ribosomal protein L5polymer17920333.61UniProt (B7MCS3)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)		Escherichia coli
10J
(J)		50S ribosomal protein L6polymer17718932.81UniProt (B7MCS0)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)		Escherichia coli
11K
(K)		50S ribosomal protein L9polymer14915789.01UniProt (B7MLK8)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)		Escherichia coli
12L
(L)		50S ribosomal protein L10polymer16517736.61UniProt (B7MIX1)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)		Escherichia coli
13M
(M)		50S ribosomal protein L11polymer14214894.41UniProt (B7MIW9)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)		Escherichia coli
14N
(N)		50S ribosomal protein L13polymer14216050.61UniProt (B7MBZ2)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)		Escherichia coli
15O
(O)		50S ribosomal protein L14polymer12313565.11UniProt (B7MCS5)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)		Escherichia coli
16P
(P)		50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)		Escherichia coliLarge ribosomal subunit protein uL15
17Q
(Q)		50S ribosomal protein L16polymer13615312.31UniProt (B7MCS8)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)		Escherichia coli
18R
(R)		50S ribosomal protein L17polymer12714423.71UniProt (B7N179)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)		Escherichia coli
19S
(S)		50S ribosomal protein L18polymer11712794.71UniProt (B7MCR9)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)		Escherichia coli
20T
(T)		50S ribosomal protein L19polymer11513159.31UniProt (B7MIU4)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)		Escherichia coli
21U
(U)		50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)		Escherichia coli
22V
(V)		50S ribosomal protein L21polymer10311586.41UniProt (B7MBV5)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)		Escherichia coli
23W
(W)		50S ribosomal protein L22polymer11012253.41UniProt (B7MCT0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)		Escherichia coli
24X
(X)		50S ribosomal protein L23polymer10011222.21UniProt (B7MCT3)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)		Escherichia coli
25Y
(Y)		50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)		Escherichia coliLarge ribosomal subunit protein uL24
26Z
(Z)		50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)		Escherichia coliLarge ribosomal subunit protein bL25
27AA
(AA)		50S ribosomal protein L27polymer859146.51UniProt (B7MBV4)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)		Escherichia coli
28BA
(BA)		50S ribosomal protein L28polymer789027.61UniProt (B7MFJ8)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)		Escherichia coli
29CA
(CA)		50S ribosomal protein L29polymer637286.51UniProt (B7MCS7)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)		Escherichia coli
30DA
(DA)		50S ribosomal protein L30polymer596554.81UniProt (B7MCR7)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)		Escherichia coli
31EA
(EA)		50S ribosomal protein L31polymer707887.11UniProt (B7MI68)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)		Escherichia coli
32FA
(FA)		50S ribosomal protein L32polymer576463.41UniProt (B7MJ76)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)		Escherichia coli
33GA
(GA)		50S ribosomal protein L33polymer556388.61UniProt (B7MFJ7)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)		Escherichia coli
34HA
(HA)		50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)		Escherichia coli
35IA
(IA)		50S ribosomal protein L35polymer657313.01UniProt (B7MAS7)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)		Escherichia coli
36JA
(JA)		50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)		Escherichia coliLarge ribosomal subunit protein bL36-A,Ribosomal protein B
37KA
(KA)		mRNApolymer278839.41synthetic construct
38MA
(MA)		Peptide chain release factor 1polymer36240815.61UniProt (B7MKB3)
Pfam (PF03462)
Pfam (PF00472)
UniProt (by SIFTS) (P0A7I0)		Escherichia coliRF-1
39NA
(OA)		30S ribosomal protein S2polymer24126781.71UniProt (B7MBF0)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)		Escherichia coli
40OA
(PA)		30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)		Escherichia coli
41PA
(QA)		30S ribosomal protein S4polymer20623514.21UniProt (B7MCR2)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)		Escherichia coli
42QA
(RA)		30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)		Escherichia coliSmall ribosomal subunit protein uS5
43RA
(SA)		30S ribosomal protein S6polymer13115211.11UniProt (P02358)
Pfam (PF01250)		Escherichia coli
44SA
(TA)		30S ribosomal protein S7polymer15617637.41UniProt (B7MCV6)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)		Escherichia coli
45TA
(UA)		30S ribosomal protein S8polymer13014146.61UniProt (B7MCS1)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)		Escherichia coli
46UA
(VA)		30S ribosomal protein S9polymer13014886.31UniProt (B7MBZ1)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)		Escherichia coli
47VA
(WA)		30S ribosomal protein S10polymer10311755.61UniProt (B7MCT6)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)		Escherichia coli
48WA
(XA)		30S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)		Escherichia coli
49XA
(YA)		30S ribosomal protein S12polymer12413768.21UniProt (B7MCV7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)		Escherichia coli
50YA
(ZA)		30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)		Escherichia coliSmall ribosomal subunit protein uS13
51ZA
(AB)		30S ribosomal protein S14polymer10211677.61UniProt (B7MCS2)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)		Escherichia coli
52AB
(BB)		30S ribosomal protein S15polymer8910290.81UniProt (B7MB86)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)		Escherichia coli
53BB
(CB)		30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)		Escherichia coli
54CB
(DB)		30S ribosomal protein S17polymer849724.51UniProt (B7MCS6)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)		Escherichia coli
55DB
(EB)		30S ribosomal protein S18polymer759005.51UniProt (B7MLK7)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)		Escherichia coli
56EB
(FB)		30S ribosomal protein S19polymer9210455.41UniProt (B7MCT1)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)		Escherichia coli
57FB
(GB)		30S ribosomal protein S20polymer879708.51UniProt (B7MAE3)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)		Escherichia coli
58GB
(HB)		30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)		Escherichia coliSmall ribosomal subunit protein bS21
Sequence modifications
B: 1 - 2903 (GenBank: 1036415628)
PDBExternal DatabaseDetails
C 747U 1155325conflict
G 1847A 1156425conflict
C: 1 - 119 (GenBank: 1370526515)
PDBExternal DatabaseDetails
A 120-expression tag
MA: 1 - 360 (UniProt: B7MKB3)
PDBExternal DatabaseDetails
Leu 361-expression tag
Glu 362-expression tag
AB: 0 - 101 (UniProt: B7MCS2)
PDBExternal DatabaseDetails
Ala 35-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2292649.2
All*Total formula weight2292649.2
*Water molecules are not included.

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon