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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6DNC

E.coli RF1 bound to E.coli 70S ribosome in response to UAU sense A-site codon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S ribosomal RNApolymer1539498725.41GenBank (1338015391)Escherichia coli
2B23S ribosomal RNApolymer2903941321.31GenBank (1036415628)Escherichia coli
3C5S ribosomal RNApolymer12038813.11GenBank (1370526515)Escherichia coli
4D, LAtRNA(fMet)polymer7724802.82GenBank (1384458579)Escherichia coli
5E50S ribosomal protein L1polymer23424765.71UniProt (B7MIX0)
Pfam (PF00687)
UniProt (by SIFTS) (P0A7L0)
In PDB		Escherichia coli
6F50S ribosomal protein L2polymer27329923.61UniProt (B7MCT2)
Pfam (PF00181)
Pfam (PF03947)
UniProt (by SIFTS) (P60422)
In PDB		Escherichia coli
7G50S ribosomal protein L3polymer20922277.51UniProt (B7MCT5)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)
In PDB		Escherichia coli
8H50S ribosomal protein L4polymer20122121.61UniProt (B7MCT4)
Pfam (PF00573)
UniProt (by SIFTS) (P60723)
In PDB		Escherichia coli
9I50S ribosomal protein L5polymer17920333.61UniProt (B7MCS3)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (P62399)
In PDB		Escherichia coli
10J50S ribosomal protein L6polymer17718932.81UniProt (B7MCS0)
Pfam (PF00347)
UniProt (by SIFTS) (P0AG55)
In PDB		Escherichia coli
11K50S ribosomal protein L9polymer14915789.01UniProt (B7MLK8)
Pfam (PF01281)
Pfam (PF03948)
UniProt (by SIFTS) (P0A7R1)
In PDB		Escherichia coli
12L50S ribosomal protein L10polymer16517736.61UniProt (B7MIX1)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)
In PDB		Escherichia coli
13M50S ribosomal protein L11polymer14214894.41UniProt (B7MIW9)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P0A7J7)
In PDB		Escherichia coli
14N50S ribosomal protein L13polymer14216050.61UniProt (B7MBZ2)
Pfam (PF00572)
UniProt (by SIFTS) (P0AA10)
In PDB		Escherichia coli
15O50S ribosomal protein L14polymer12313565.11UniProt (B7MCS5)
Pfam (PF00238)
UniProt (by SIFTS) (P0ADY3)
In PDB		Escherichia coli
16P50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coliLarge ribosomal subunit protein uL15
17Q50S ribosomal protein L16polymer13615312.31UniProt (B7MCS8)
Pfam (PF00252)
UniProt (by SIFTS) (P0ADY7)
In PDB		Escherichia coli
18R50S ribosomal protein L17polymer12714423.71UniProt (B7N179)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)
In PDB		Escherichia coli
19S50S ribosomal protein L18polymer11712794.71UniProt (B7MCR9)
Pfam (PF00861)
UniProt (by SIFTS) (P0C018)
In PDB		Escherichia coli
20T50S ribosomal protein L19polymer11513159.31UniProt (B7MIU4)
Pfam (PF01245)
UniProt (by SIFTS) (P0A7K6)
In PDB		Escherichia coli
21U50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
UniProt (by SIFTS) (P0A7L3)
In PDB		Escherichia coli
22V50S ribosomal protein L21polymer10311586.41UniProt (B7MBV5)
Pfam (PF00829)
UniProt (by SIFTS) (P0AG48)
In PDB		Escherichia coli
23W50S ribosomal protein L22polymer11012253.41UniProt (B7MCT0)
Pfam (PF00237)
UniProt (by SIFTS) (P61175)
In PDB		Escherichia coli
24X50S ribosomal protein L23polymer10011222.21UniProt (B7MCT3)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)
In PDB		Escherichia coli
25Y50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coliLarge ribosomal subunit protein uL24
26Z50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliLarge ribosomal subunit protein bL25
27AA50S ribosomal protein L27polymer859146.51UniProt (B7MBV4)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)
In PDB		Escherichia coli
28BA50S ribosomal protein L28polymer789027.61UniProt (B7MFJ8)
Pfam (PF00830)
UniProt (by SIFTS) (P0A7M2)
In PDB		Escherichia coli
29CA50S ribosomal protein L29polymer637286.51UniProt (B7MCS7)
Pfam (PF00831)
UniProt (by SIFTS) (P0A7M6)
In PDB		Escherichia coli
30DA50S ribosomal protein L30polymer596554.81UniProt (B7MCR7)
Pfam (PF00327)
UniProt (by SIFTS) (P0AG51)
In PDB		Escherichia coli
31EA50S ribosomal protein L31polymer707887.11UniProt (B7MI68)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli
32FA50S ribosomal protein L32polymer576463.41UniProt (B7MJ76)
Pfam (PF01783)
UniProt (by SIFTS) (P0A7N4)
In PDB		Escherichia coli
33GA50S ribosomal protein L33polymer556388.61UniProt (B7MFJ7)
Pfam (PF00471)
UniProt (by SIFTS) (P0A7N9)
In PDB		Escherichia coli
34HA50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
UniProt (by SIFTS) (P0A7P5)
In PDB		Escherichia coli
35IA50S ribosomal protein L35polymer657313.01UniProt (B7MAS7)
Pfam (PF01632)
UniProt (by SIFTS) (P0A7Q1)
In PDB		Escherichia coli
36JA50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coliLarge ribosomal subunit protein bL36-A,Ribosomal protein B
37KAmRNApolymer278839.41synthetic construct
38MAPeptide chain release factor 1polymer36240815.61UniProt (B7MKB3)
Pfam (PF03462)
Pfam (PF00472)
UniProt (by SIFTS) (P0A7I0)
In PDB		Escherichia coliRF-1
39OA30S ribosomal protein S2polymer24126781.71UniProt (B7MBF0)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
40PA30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
41QA30S ribosomal protein S4polymer20623514.21UniProt (B7MCR2)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
42RA30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coliSmall ribosomal subunit protein uS5
43SA30S ribosomal protein S6polymer13115211.11UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli
44TA30S ribosomal protein S7polymer15617637.41UniProt (B7MCV6)
Pfam (PF00177)
UniProt (by SIFTS) (P02359)
In PDB		Escherichia coli
45UA30S ribosomal protein S8polymer13014146.61UniProt (B7MCS1)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
46VA30S ribosomal protein S9polymer13014886.31UniProt (B7MBZ1)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
47WA30S ribosomal protein S10polymer10311755.61UniProt (B7MCT6)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
48XA30S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
49YA30S ribosomal protein S12polymer12413768.21UniProt (B7MCV7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
50ZA30S ribosomal protein S13polymer11813128.51UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coliSmall ribosomal subunit protein uS13
51AB30S ribosomal protein S14polymer10211677.61UniProt (B7MCS2)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
52BB30S ribosomal protein S15polymer8910290.81UniProt (B7MB86)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
53CB30S ribosomal protein S16polymer829207.61UniProt (B7MIU7)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
54DB30S ribosomal protein S17polymer849724.51UniProt (B7MCS6)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
55EB30S ribosomal protein S18polymer759005.51UniProt (B7MLK7)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
56FB30S ribosomal protein S19polymer9210455.41UniProt (B7MCT1)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
57GB30S ribosomal protein S20polymer879708.51UniProt (B7MAE3)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
58HB30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coliSmall ribosomal subunit protein bS21
Sequence modifications
B: 1 - 2903 (GenBank: 1036415628)
PDBExternal DatabaseDetails
C 747U 1155325conflict
G 1847A 1156425conflict
C: 1 - 119 (GenBank: 1370526515)
PDBExternal DatabaseDetails
A 120-expression tag
MA: 1 - 360 (UniProt: B7MKB3)
PDBExternal DatabaseDetails
Leu 361-expression tag
Glu 362-expression tag
AB: 0 - 101 (UniProt: B7MCS2)
PDBExternal DatabaseDetails
Ala 35-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2292649.2
All*Total formula weight2292649.2
*Water molecules are not included.

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PDB entries from 2024-07-24

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