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6DBZ

Crystal structure of Nudix 1 from Arabidopsis thaliana complexed with isopentenyl diphosphate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Nudix hydrolase 1polymer15016655.82UniProt (Q9CA40)
Pfam (PF00293)
Arabidopsis thaliana (Mouse-ear cress)AtNUDT1,7,8-dihydro-8-oxoguanine-triphosphatase,8-oxo-dGTP diphosphatase,8-oxo-dGTPase,Dihydroneopterin triphosphate diphosphatase,Dihydroneopterin triphosphate pyrophosphohydrolase,DHNTP pyrophosphohydrolase,NADH pyrophosphatase
2C, H
(A, B)
ISOPENTYL PYROPHOSPHATEnon-polymer248.12Chemie (IPR)
3D, E, F, G, I...
(A, B)
MAGNESIUM IONnon-polymer24.37Chemie (MG)
4L, M
(A, B)
waterwater18.0192Chemie (HOH)
Sequence modifications
A, B: 1 - 147 (UniProt: Q9CA40)
PDBExternal DatabaseDetails
Gly -2-expression tag
Ser -1-expression tag
His 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight33311.7
Non-Polymers*Number of molecules9
Total formula weight666.4
All*Total formula weight33978.0
*Water molecules are not included.

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PDB entries from 2025-07-30

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