6CBP
Crystal structure of the single chain variable fragment of the DH270.6 bnAb in complex with the Man9-V3 glycopeptide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | P | Man9-V3 glycopeptide | polymer | 30 | 3368.7 | 1 | UniProt (Q74448) Pfam (PF00516) In PDB | Human immunodeficiency virus 1 | |
2 | A | DH270.6 single chain variable fragment | polymer | 256 | 27297.1 | 1 | Homo sapiens (Human) | ||
3 | B | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
4 | C | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G01760ZU) | |||
5 | D | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose | branched | 504.4 | 1 | In PDB GlyTouCan (G57891XD) | |||
6 | E | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose | branched | 342.3 | 1 | In PDB BIRD (PRD_900111) GlyTouCan (G53402KW) | 2alpha-alpha-mannobiose | ||
7 | water | water | 18.0 | 95 | Chemie (HOH) |
Sequence modifications
P: 293 - 304 (UniProt: Q74448)
P: 320 - 336 (UniProt: Q74448)
P: 320 - 336 (UniProt: Q74448)
PDB | External Database | Details |
---|---|---|
Pro 305 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 30665.8 | |
Branched | Number of molecules | 4 |
Total formula weight | 2506.2 | |
All* | Total formula weight | 33172.0 |