6CB1
Yeast nucleolar pre-60S ribosomal subunit (state 3)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 35S pre-ribosomal RNA miscRNA | polymer | 3396 | 1097477.9 | 1 | Saccharomyces cerevisiae BY4741 (Baker's yeast) | ||
| 2 | B (2) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (1267176496) | Saccharomyces cerevisiae BY4741 | |
| 3 | C (6) | ITS2 | polymer | 232 | 74308.4 | 1 | GenBank (1104417410) | Saccharomyces cerevisiae BY4741 | |
| 4 | D (A) | Ribosome biogenesis protein NSA1 | polymer | 463 | 51982.5 | 1 | UniProt (by SIFTS) (P53136) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 5 | E (C) | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 1 | UniProt (A0A250WFX4) Pfam (PF00573) Pfam (PF14374) UniProt (by SIFTS) (P10664) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 6 | F (D) | Protein MAK16 | polymer | 306 | 35754.6 | 1 | UniProt (A0A250WNS8) Pfam (PF01778) Pfam (PF04874) UniProt (by SIFTS) (P10962) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 7 | G (E) | 60S ribosomal protein L6-A | polymer | 176 | 20000.6 | 1 | UniProt (A0A250WFC2) Pfam (PF01159) UniProt (by SIFTS) (Q02326) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 8 | H (F) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (A0A250WCF3) Pfam (PF08079) Pfam (PF00327) UniProt (by SIFTS) (P05737) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 9 | I (G) | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 10 | J (I) | Ribosome production factor 1 | polymer | 295 | 35184.4 | 1 | UniProt (A0A250WKW9) Pfam (PF04427) UniProt (by SIFTS) (P38805) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 11 | K (K) | Proteasome-interacting protein CIC1 | polymer | 376 | 42596.7 | 1 | UniProt (A0A250WL31) Pfam (PF00687) UniProt (by SIFTS) (P38779) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 12 | L (L) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (A0A250W9H2) Pfam (PF01294) UniProt (by SIFTS) (Q12690) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 13 | M (M) | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 14 | N (N) | 60S ribosomal protein L15-A | polymer | 204 | 24482.4 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 15 | O (O) | 60S ribosomal protein L16-A | polymer | 199 | 22247.2 | 1 | UniProt (A0A250WM14) Pfam (PF00572) UniProt (by SIFTS) (P26784) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 16 | P (P) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 17 | Q (Q) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (A0A250WH37) Pfam (PF17135) UniProt (by SIFTS) (P0CX49) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 18 | R (S) | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 1 | UniProt (A0A250WE58) Pfam (PF01775) UniProt (by SIFTS) (P0CX23) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 19 | S (X) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (A0A250WBI4) Pfam (PF03939) Pfam (PF00276) UniProt (by SIFTS) (P04456) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 20 | T (Y) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 21 | U (Z) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 22 | V (7) | Nucleolar protein 16 | polymer | 231 | 26954.4 | 1 | UniProt (P40007) Pfam (PF09420) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 23 | W (b) | Ribosome biogenesis protein BRX1 | polymer | 291 | 33079.9 | 1 | UniProt (Q08235) Pfam (PF04427) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 24 | X (c) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 25 | Y (d) | Ribosome biogenesis protein YTM1 | polymer | 465 | 39591.8 | 1 | Saccharomyces cerevisiae BY4741 (Baker's yeast) | ||
| 26 | Z (e) | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (A0A250WF67) Pfam (PF01655) UniProt (by SIFTS) (P38061) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 27 | AA (f) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 28 | BA (g) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (A0A250WJC9) Pfam (PF01199) UniProt (by SIFTS) (P87262) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 29 | CA (h) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (A0A250W9S3) Pfam (PF00831) UniProt (by SIFTS) (P0CX84) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 30 | DA (i) | 60S ribosomal protein L36-A | polymer | 100 | 11151.3 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 31 | EA (j) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 32 | FA (k) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (A0A250WKJ9) Pfam (PF01781) UniProt (by SIFTS) (P49167) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 33 | GA (m) | rRNA-processing protein EBP2 | polymer | 102 | 8698.7 | 1 | Saccharomyces cerevisiae BY4741 (Baker's yeast) | ||
| 34 | HA (n) | Pescadillo homolog | polymer | 605 | 69984.1 | 1 | Pfam (PF06732) Pfam (PF16589) UniProt (by SIFTS) (P53261) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 35 | IA (o) | Ribosome biogenesis protein 15 | polymer | 220 | 25499.2 | 1 | UniProt (P53927) Pfam (PF00076) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 36 | JA (p) | ATP-dependent RNA helicase HAS1 | polymer | 505 | 56798.3 | 1 | UniProt (A0A250WER3) Pfam (PF00270) Pfam (PF00271) Pfam (PF13959) UniProt (by SIFTS) (Q03532) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 37 | KA (s) | Ribosome biogenesis protein ERB1 | polymer | 569 | 62860.7 | 1 | UniProt (A6ZMA9) UniProt (Q04660) Pfam (PF08145) Pfam (PF00400) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 38 | LA (t) | Ribosome biogenesis protein RLP7 | polymer | 322 | 35210.6 | 1 | UniProt (P40693) Pfam (PF00327) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 39 | MA (x) | BRX1 associated peptide | polymer | 28 | 2401.0 | 1 | Saccharomyces cerevisiae BY4741 (Baker's yeast) | ||
| 40 | NA (z) | Ribosomal RNA-processing protein 1 | polymer | 278 | 33250.5 | 1 | UniProt (P35178) Pfam (PF05997) | Saccharomyces cerevisiae BY4741 (Baker's yeast) | |
| 41 | OA, PA (D, j) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
b: 1 - 291 (UniProt: Q08235)
b: 123 - 131 (PDB: 6CB1)
b: 132 - 164 (PDB: 6CB1)
b: 165 - 173 (PDB: 6CB1)
b: 174 - 291 (PDB: 6CB1)
s: 239 - 298 (UniProt: A6ZMA9)
s: 299 - 371 (PDB: 6CB1)
s: 372 - 807 (UniProt: Q04660)
t: 1 - 322 (UniProt: P40693)
t: 20 - 53 (PDB: 6CB1)
t: 54 - 322 (PDB: 6CB1)
b: 123 - 131 (PDB: 6CB1)
b: 132 - 164 (PDB: 6CB1)
b: 165 - 173 (PDB: 6CB1)
b: 174 - 291 (PDB: 6CB1)
s: 239 - 298 (UniProt: A6ZMA9)
s: 299 - 371 (PDB: 6CB1)
s: 372 - 807 (UniProt: Q04660)
t: 1 - 322 (UniProt: P40693)
t: 20 - 53 (PDB: 6CB1)
t: 54 - 322 (PDB: 6CB1)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 40 |
| Total formula weight | 2185073.5 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 130.8 | |
| All* | Total formula weight | 2185204.3 |
