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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6CB1

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1135S pre-ribosomal RNA miscRNApolymer33961097477.91Saccharomyces cerevisiae BY4741 (Baker's yeast)
225.8S rRNApolymer15850682.91GenBank (1267176496)Saccharomyces cerevisiae BY4741
36ITS2polymer23274308.41GenBank (1104417410)Saccharomyces cerevisiae BY4741
4ARibosome biogenesis protein NSA1polymer46351982.51UniProt (by SIFTS) (P53136)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
5C60S ribosomal protein L4-Apolymer36239159.11UniProt (A0A250WFX4)
Pfam (PF00573)
Pfam (PF14374)
UniProt (by SIFTS) (P10664)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
6DProtein MAK16polymer30635754.61UniProt (A0A250WNS8)
Pfam (PF01778)
Pfam (PF04874)
UniProt (by SIFTS) (P10962)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
7E60S ribosomal protein L6-Apolymer17620000.61UniProt (A0A250WFC2)
Pfam (PF01159)
UniProt (by SIFTS) (Q02326)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
8F60S ribosomal protein L7-Apolymer24427686.31UniProt (A0A250WCF3)
Pfam (PF08079)
Pfam (PF00327)
UniProt (by SIFTS) (P05737)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
9G60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
10IRibosome production factor 1polymer29535184.41UniProt (A0A250WKW9)
Pfam (PF04427)
UniProt (by SIFTS) (P38805)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
11KProteasome-interacting protein CIC1polymer37642596.71UniProt (A0A250WL31)
Pfam (PF00687)
UniProt (by SIFTS) (P38779)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
12L60S ribosomal protein L13-Apolymer19922604.21UniProt (A0A250W9H2)
Pfam (PF01294)
UniProt (by SIFTS) (Q12690)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
13M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
14N60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
15O60S ribosomal protein L16-Apolymer19922247.21UniProt (A0A250WM14)
Pfam (PF00572)
UniProt (by SIFTS) (P26784)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
16P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
17Q60S ribosomal protein L18-Apolymer18620609.31UniProt (A0A250WH37)
Pfam (PF17135)
UniProt (by SIFTS) (P0CX49)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
18S60S ribosomal protein L20-Apolymer17220478.91UniProt (A0A250WE58)
Pfam (PF01775)
UniProt (by SIFTS) (P0CX23)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
19X60S ribosomal protein L25polymer14215787.61UniProt (A0A250WBI4)
Pfam (PF03939)
Pfam (PF00276)
UniProt (by SIFTS) (P04456)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
20Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
21Z60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
227Nucleolar protein 16polymer23126954.41UniProt (P40007)
Pfam (PF09420)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
23bRibosome biogenesis protein BRX1polymer29133079.91UniProt (Q08235)
Pfam (PF04427)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
24c60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
25dRibosome biogenesis protein YTM1polymer46539591.81Saccharomyces cerevisiae BY4741 (Baker's yeast)
26e60S ribosomal protein L32polymer13014809.41UniProt (A0A250WF67)
Pfam (PF01655)
UniProt (by SIFTS) (P38061)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
27f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
28g60S ribosomal protein L34-Apolymer12113673.21UniProt (A0A250WJC9)
Pfam (PF01199)
UniProt (by SIFTS) (P87262)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
29h60S ribosomal protein L35-Apolymer12013942.61UniProt (A0A250W9S3)
Pfam (PF00831)
UniProt (by SIFTS) (P0CX84)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
30i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
31j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
32k60S ribosomal protein L38polymer788845.61UniProt (A0A250WKJ9)
Pfam (PF01781)
UniProt (by SIFTS) (P49167)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
33mrRNA-processing protein EBP2polymer1028698.71Saccharomyces cerevisiae BY4741 (Baker's yeast)
34nPescadillo homologpolymer60569984.11Pfam (PF06732)
Pfam (PF16589)
UniProt (by SIFTS) (P53261)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
35oRibosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
36pATP-dependent RNA helicase HAS1polymer50556798.31UniProt (A0A250WER3)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF13959)
UniProt (by SIFTS) (Q03532)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
37sRibosome biogenesis protein ERB1polymer56962860.71UniProt (A6ZMA9)
UniProt (Q04660)
Pfam (PF08145)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
38tRibosome biogenesis protein RLP7polymer32235210.61UniProt (P40693)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
39xBRX1 associated peptidepolymer282401.01Saccharomyces cerevisiae BY4741 (Baker's yeast)
40zRibosomal RNA-processing protein 1polymer27833250.51UniProt (P35178)
Pfam (PF05997)
In PDB		Saccharomyces cerevisiae BY4741 (Baker's yeast)
41D, jZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
b: 1 - 291 (UniProt: Q08235)
b: 123 - 131 (PDB: 6CB1)
b: 132 - 164 (PDB: 6CB1)
b: 165 - 173 (PDB: 6CB1)
b: 174 - 291 (PDB: 6CB1)
s: 239 - 298 (UniProt: A6ZMA9)
s: 299 - 371 (PDB: 6CB1)
s: 372 - 807 (UniProt: Q04660)
t: 1 - 322 (UniProt: P40693)
t: 20 - 53 (PDB: 6CB1)
t: 54 - 322 (PDB: 6CB1)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains40
Total formula weight2185073.5
Non-Polymers*Number of molecules2
Total formula weight130.8
All*Total formula weight2185204.3
*Water molecules are not included.

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PDB entries from 2024-04-17

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