6C5L
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AA, CA | 16S rRNA | polymer | 1522 | 493958.3 | 2 | GenBank (155076) | Thermus thermophilus | |
2 | AB, CB | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 2 | UniProt (P62662) Pfam (PF00318) UniProt (by SIFTS) (P80371) In PDB | Thermus thermophilus | |
3 | AC, CC | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) In PDB | Thermus thermophilus | |
4 | AD, CD | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) In PDB | Thermus thermophilus | |
5 | AE, CE | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 2 | UniProt (P27152) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) In PDB | Thermus thermophilus | |
6 | AF, CF | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P23370) Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) In PDB | Thermus thermophilus | |
7 | AG, CG | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 2 | UniProt (P62667) Pfam (PF00177) UniProt (by SIFTS) (P17291) In PDB | Thermus thermophilus | |
8 | AH, CH | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P24319) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus | |
9 | AI, CI | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 2 | UniProt (P62669) Pfam (PF00380) UniProt (by SIFTS) (P80374) In PDB | Thermus thermophilus | |
10 | AJ, CJ | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (P80375) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) In PDB | Thermus thermophilus | |
11 | AK, CK | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P62654) Pfam (PF00411) UniProt (by SIFTS) (P80376) In PDB | Thermus thermophilus | |
12 | AL, CL | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 2 | UniProt (P17293) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB | Thermus thermophilus | |
13 | AM, CM | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P62655) Pfam (PF00416) UniProt (by SIFTS) (P80377) In PDB | Thermus thermophilus | |
14 | AN, CN | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P24320) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus | |
15 | AO, CO | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (P80378) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) In PDB | Thermus thermophilus | |
16 | AP, CP | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (P62238) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) In PDB | Thermus thermophilus | |
17 | AQ, CQ | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 2 | UniProt (P0DOY7) Pfam (PF00366) In PDB | Thermus thermophilus | |
18 | AR, CR | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (P62659) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) In PDB | Thermus thermophilus | |
19 | AS, CS | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 2 | UniProt (P80381) Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) In PDB | Thermus thermophilus | |
20 | AT, CT | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 2 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus | |
21 | AU, CU | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (P62612) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) In PDB | Thermus thermophilus | |
22 | AV, AW, CV, CW | E-site tRNA PHE OR P-site tRNA PHE (unmodified bases) | polymer | 76 | 24485.5 | 4 | GenBank (1315725308) | Escherichia coli | |
23 | AX, CX | mRNA | polymer | 25 | 8133.0 | 2 | Escherichia coli | ||
24 | AY, CY | Peptide chain release factor 2 | polymer | 357 | 40700.2 | 2 | UniProt (F6DD48) Pfam (PF03462) Pfam (PF00472) UniProt (by SIFTS) (Q5SM01) In PDB | Thermus thermophilus | |
25 | B0, D0 | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus | |
26 | B1, D1 | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) In PDB | Thermus thermophilus | |
27 | B2, D2 | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q72I12) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) In PDB | Thermus thermophilus | |
28 | B3, D3 | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (P74909) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) In PDB | Thermus thermophilus | |
29 | B4, D4 | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q72JR0) Pfam (PF01197) UniProt (by SIFTS) (Q5SJE1) In PDB | Thermus thermophilus | |
30 | B5, D5 | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus | |
31 | B6, D6 | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (Q72GW3) Pfam (PF00471) UniProt (by SIFTS) (P35871) In PDB | Thermus thermophilus | |
32 | B7, D7 | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus | |
33 | B8, D8 | 50S ribosomal protein L35 | polymer | 65 | 7506.2 | 2 | UniProt (P80341) Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) In PDB | Thermus thermophilus | |
34 | B9, D9 | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (P80256) Pfam (PF00444) UniProt (by SIFTS) (Q5SHR2) In PDB | Thermus thermophilus | |
35 | BA, DA | 23S rRNA | polymer | 2915 | 947935.4 | 2 | GenBank (37223181) | Thermus thermophilus | |
36 | BB, DB | 5S rRNA | polymer | 122 | 39494.5 | 2 | GenBank (37223181) | Thermus thermophilus | |
37 | BC, DC | 50S ribosomal protein L1 | polymer | 229 | 24872.7 | 2 | UniProt (Q5SLP7) Pfam (PF00687) In PDB | Thermus thermophilus | |
38 | BD, DD | 50S ribosomal protein L2 | polymer | 276 | 30532.6 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) In PDB | Thermus thermophilus | |
39 | BE, DE | 50S ribosomal protein L3 | polymer | 206 | 22450.2 | 2 | UniProt (P52860) Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) In PDB | Thermus thermophilus | |
40 | BF, DF | 50S ribosomal protein L4 | polymer | 210 | 23271.9 | 2 | UniProt (Q5SHN9) Pfam (PF00573) In PDB | Thermus thermophilus | |
41 | BG, DG | 50S ribosomal protein L5 | polymer | 182 | 21061.6 | 2 | UniProt (P41201) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (Q5SHQ0) In PDB | Thermus thermophilus | |
42 | BH, DH | 50S ribosomal protein L6 | polymer | 180 | 19568.9 | 2 | UniProt (P24316) Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) In PDB | Thermus thermophilus | |
43 | BI, DI | 50S ribosomal protein L9 | polymer | 148 | 16422.2 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus | |
44 | BJ, DJ | 50S ribosomal protein L10 | polymer | 130 | 11081.7 | 2 | Thermus thermophilus | ||
45 | BK, DK | 50S ribosomal protein L11 | polymer | 147 | 15526.1 | 2 | UniProt (P36238) Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (Q5SLP6) In PDB | Thermus thermophilus | |
46 | BN, DN | 50S ribosomal protein L13 | polymer | 140 | 15927.9 | 2 | UniProt (Q72IN1) Pfam (PF00572) UniProt (by SIFTS) (P60488) In PDB | Thermus thermophilus | |
47 | BO, DO | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) In PDB | Thermus thermophilus | |
48 | BP, DP | 50S ribosomal protein L15 | polymer | 150 | 16319.1 | 2 | UniProt (P74910) Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) In PDB | Thermus thermophilus | |
49 | BQ, DQ | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) In PDB | Thermus thermophilus | |
50 | BR, DR | 50S ribosomal protein L17 | polymer | 118 | 13750.1 | 2 | UniProt (Q72I33) Pfam (PF01196) UniProt (by SIFTS) (Q9Z9H5) In PDB | Thermus thermophilus | |
51 | BS, DS | 50S ribosomal protein L18 | polymer | 112 | 12639.8 | 2 | UniProt (P80320) Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) In PDB | Thermus thermophilus | |
52 | BT, DT | 50S ribosomal protein L19 | polymer | 146 | 17188.8 | 2 | UniProt (P60490) Pfam (PF01245) In PDB | Thermus thermophilus | |
53 | BU, DU | 50S ribosomal protein L20 | polymer | 118 | 13779.3 | 2 | UniProt (Q72L76) Pfam (PF00453) UniProt (by SIFTS) (P60491) In PDB | Thermus thermophilus | |
54 | BV, DV | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) UniProt (by SIFTS) (P60492) In PDB | Thermus thermophilus | |
55 | BW, DW | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (P48286) Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) In PDB | Thermus thermophilus | |
56 | BX, DX | 50S ribosomal protein L23 | polymer | 96 | 10759.8 | 2 | UniProt (Q9RA57) Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) In PDB | Thermus thermophilus | |
57 | BY, DY | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q56435) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) In PDB | Thermus thermophilus | |
58 | BZ, DZ | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) In PDB | Thermus thermophilus | |
59 | AA, BA, BT, CA, DA... | MAGNESIUM ION | non-polymer | 24.3 | 474 | Chemie (MG) | |||
60 | CD, CN, D9, AD, AN... | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
61 | water | water | 18.0 | 19 | Chemie (HOH) |
Sequence modifications
AY, CY: 6 - 356 (UniProt: F6DD48)
BA, DA: 1 - 2906 (GenBank: 37223181)
PDB | External Database | Details |
---|---|---|
His 0 | - | expression tag |
His 1 | - | expression tag |
His 2 | - | expression tag |
His 3 | - | expression tag |
His 4 | - | expression tag |
His 5 | - | expression tag |
PDB | External Database | Details |
---|---|---|
G 1227 | Unk 1294 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 118 |
Total formula weight | 4636103.4 | |
Non-Polymers* | Number of molecules | 480 |
Total formula weight | 11913.0 | |
All* | Total formula weight | 4648016.5 |