6C4H
Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 23S rRNA | polymer | 2904 | 941818.6 | 1 | GenBank (687670942) | Escherichia coli | |
| 2 | B (C) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | Large ribosomal subunit protein uL2 |
| 3 | C (D) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | Large ribosomal subunit protein uL3 |
| 4 | D (N) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 5 | E (X) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | Large ribosomal subunit protein bL27 |
| 6 | F (x) | P-site tRNA fMet | polymer | 77 | 24786.8 | 1 | GenBank (817573384) | Escherichia coli | |
| 7 | G (v) | Peptide chain release factor RF2 | polymer | 384 | 43384.9 | 1 | UniProt (P07012) Pfam (PF03462) Pfam (PF00472) | Escherichia coli | RF-2 |
| 8 | AA, BA, CA, DA, EA... (A) | MAGNESIUM ION | non-polymer | 24.3 | 34 | Chemie (MG) |
Sequence modifications
A: 1 - 2904 (GenBank: 687670942)
v: 1 - 365 (UniProt: P07012)
| PDB | External Database | Details |
|---|---|---|
| A 887 | U 2680679 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala -18 | - | expression tag |
| His -17 | - | expression tag |
| His -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| Ser -11 | - | expression tag |
| Ala -10 | - | expression tag |
| Ala -9 | - | expression tag |
| Leu -8 | - | expression tag |
| Glu -7 | - | expression tag |
| Val -6 | - | expression tag |
| Leu -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Pro -1 | - | expression tag |
| Gly 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 1086650.3 | |
| Non-Polymers* | Number of molecules | 34 |
| Total formula weight | 826.4 | |
| All* | Total formula weight | 1087476.7 |
