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6C0B

Structural basis for recognition of frizzled proteins by Clostridium difficile toxin B

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Toxin Bpolymer52259023.21UniProt (M4NKV9)
Pfam (PF12920)
UniProt (by SIFTS) (P18177)
Clostridioides difficile (Peptoclostridium difficile)
2B
(B)
Frizzled-2polymer15617447.81UniProt (Q14332)
Pfam (PF01392)
Homo sapiens (Human)hFz2,FzE2
3C, D, E
(A)
MALONATE IONnon-polymer102.03Chemie (MLI)
4F
(B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
5G
(B)
PALMITOLEIC ACIDnon-polymer254.41Chemie (PAM)
6H, I
(A, B)
waterwater18.037Chemie (HOH)
Sequence modifications
A: 1285 - 1804 (UniProt: M4NKV9)
PDBExternal DatabaseDetails
Gly 1283-expression tag
Ser 1284-expression tag
B: 34 - 156 (UniProt: Q14332)
PDBExternal DatabaseDetails
His 1-expression tag
His 2-expression tag
His 3-expression tag
His 4-expression tag
His 5-expression tag
His 6-expression tag
His 7-expression tag
His 8-expression tag
His 9-expression tag
Ser 10-expression tag
Gly 11-expression tag
Gly 12-expression tag
Gly 13-expression tag
Ser 14-expression tag
Gly 15-expression tag
Gly 16-expression tag
Gly 17-expression tag
Ile 18-expression tag
Glu 19-expression tag
Gly 20-expression tag
Arg 21-expression tag
Pro 22-expression tag
Ser 23-expression tag
Gly 24-expression tag
Ser 25-expression tag
Leu 26-expression tag
Glu 27-expression tag
Val 28-expression tag
Leu 29-expression tag
Phe 30-expression tag
Gln 31-expression tag
Gly 32-expression tag
Pro 33-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight76470.9
Non-Polymers*Number of molecules5
Total formula weight781.8
All*Total formula weight77252.7
*Water molecules are not included.

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PDB entries from 2025-06-25

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