6BXM
Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAM/cleaved SAM
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Diphthamide biosynthesis enzyme Dph2 | polymer | 327 | 36459.3 | 2 | UniProt (A0A062UZ78) Pfam (PF01866) In PDB | Candidatus Methanoperedens nitroreducens | |
2 | A, B | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
3 | A | S-ADENOSYLMETHIONINE | non-polymer | 398.4 | 1 | Chemie (SAM) | |||
4 | B | ALPHA-AMINOBUTYRIC ACID | non-polymer | 103.1 | 1 | Chemie (ABA) | |||
5 | B | 5'-DEOXY-5'-METHYLTHIOADENOSINE | non-polymer | 297.3 | 1 | Chemie (MTA) | |||
6 | water | water | 18.0 | 200 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 323 (UniProt: A0A062UZ78)
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
Met 0 | - | expression tag |
Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 72918.7 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 1502.2 | |
All* | Total formula weight | 74420.8 |