6BXM
Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAM/cleaved SAM
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Diphthamide biosynthesis enzyme Dph2 | polymer | 327 | 36459.3 | 2 | UniProt (A0A062UZ78) | Candidatus Methanoperedens nitroreducens | |
| 2 | C, E (A, B) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
| 3 | D (A) | S-ADENOSYLMETHIONINE | non-polymer | 398.4 | 1 | Chemie (SAM) | |||
| 4 | F (B) | ALPHA-AMINOBUTYRIC ACID | non-polymer | 103.1 | 1 | Chemie (ABA) | |||
| 5 | G (B) | 5'-DEOXY-5'-METHYLTHIOADENOSINE | non-polymer | 297.3 | 1 | Chemie (MTA) | |||
| 6 | H, I (A, B) | water | water | 18.0 | 200 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 323 (UniProt: A0A062UZ78)
| PDB | External Database | Details |
|---|---|---|
| Gly -3 | - | expression tag |
| Ser -2 | - | expression tag |
| His -1 | - | expression tag |
| Met 0 | - | expression tag |
| Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 72918.7 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 1502.2 | |
| All* | Total formula weight | 74420.8 |
