6BXM
Crystal structure of Candidatus Methanoperedens nitroreducens Dph2 with 4Fe-4S cluster and SAM/cleaved SAM
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0016740 | molecular_function | transferase activity |
| A | 0017183 | biological_process | protein histidyl modification to diphthamide |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| A | 0090560 | molecular_function | 2-(3-amino-3-carboxypropyl)histidine synthase activity |
| B | 0016740 | molecular_function | transferase activity |
| B | 0017183 | biological_process | protein histidyl modification to diphthamide |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| B | 0090560 | molecular_function | 2-(3-amino-3-carboxypropyl)histidine synthase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 A 401 |
| Chain | Residue |
| A | CYS61 |
| A | GLY158 |
| A | CYS159 |
| A | CYS283 |
| A | ARG285 |
| A | SAM402 |
| site_id | AC2 |
| Number of Residues | 17 |
| Details | binding site for residue SAM A 402 |
| Chain | Residue |
| A | HIS180 |
| A | LYS234 |
| A | GLN237 |
| A | ASP263 |
| A | LEU264 |
| A | VAL265 |
| A | CYS283 |
| A | ARG285 |
| A | ILE286 |
| A | ASP289 |
| A | ASP290 |
| A | SF4401 |
| A | HOH558 |
| A | HOH561 |
| A | PHE58 |
| A | LEU157 |
| A | GLY158 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 B 401 |
| Chain | Residue |
| B | CYS61 |
| B | GLY158 |
| B | CYS159 |
| B | CYS283 |
| B | ARG285 |
| B | ABA402 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue ABA B 402 |
| Chain | Residue |
| B | PHE58 |
| B | LEU157 |
| B | GLY158 |
| B | HIS180 |
| B | ARG285 |
| B | SF4401 |
| B | MTA403 |
| site_id | AC5 |
| Number of Residues | 13 |
| Details | binding site for residue MTA B 403 |
| Chain | Residue |
| B | PHE58 |
| B | SER232 |
| B | LYS234 |
| B | GLN237 |
| B | ASP263 |
| B | LEU264 |
| B | VAL265 |
| B | CYS283 |
| B | ILE286 |
| B | ASP289 |
| B | ASP290 |
| B | ABA402 |
| B | HOH539 |
