6BXK
Crystal structure of Pyrococcus horikoshii Dph2 with 4Fe-4S cluster and MTA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | 2-(3-amino-3-carboxypropyl)histidine synthase | polymer | 378 | 42538.3 | 2 | UniProt (O58832) Pfam (PF01866) In PDB | Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) | Diphthamide biosynthesis protein Dph2,S-adenosyl-L-methionine:L-histidine 3-amino-3-carboxypropyltransferase |
2 | A, B | 5'-DEOXY-5'-METHYLTHIOADENOSINE | non-polymer | 297.3 | 2 | Chemie (MTA) | |||
3 | A, B | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
4 | A, B | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
5 | water | water | 18.0 | 53 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 342 (UniProt: O58832)
PDB | External Database | Details |
---|---|---|
Met -35 | - | initiating methionine |
Gly -34 | - | expression tag |
Ser -33 | - | expression tag |
His -32 | - | expression tag |
His -31 | - | expression tag |
His -30 | - | expression tag |
His -29 | - | expression tag |
His -28 | - | expression tag |
His -27 | - | expression tag |
Asp -26 | - | expression tag |
Ile -25 | - | expression tag |
Thr -24 | - | expression tag |
Ser -23 | - | expression tag |
Leu -22 | - | expression tag |
Tyr -21 | - | expression tag |
Lys -20 | - | expression tag |
Lys -19 | - | expression tag |
Ala -18 | - | expression tag |
Gly -17 | - | expression tag |
Ser -16 | - | expression tag |
Ala -15 | - | expression tag |
Ala -14 | - | expression tag |
Ala -13 | - | expression tag |
Val -12 | - | expression tag |
Leu -11 | - | expression tag |
Glu -10 | - | expression tag |
Glu -9 | - | expression tag |
Asn -8 | - | expression tag |
Leu -7 | - | expression tag |
Tyr -6 | - | expression tag |
Phe -5 | - | expression tag |
Gln -4 | - | expression tag |
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
Phe -1 | - | expression tag |
Thr 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 85076.6 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1490.1 | |
All* | Total formula weight | 86566.7 |