6BNL
Crystal structure of TCR-MHC-like molecule
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E | Antigen-presenting glycoprotein CD1d1 | polymer | 302 | 34662.0 | 2 | UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB | Mus musculus (Mouse) | MCG3074,isoform CRA_a |
| 2 | B, F | Beta-2-microglobulin | polymer | 99 | 11660.4 | 2 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
| 3 | C, G | NKT Valpha14 (MOUSE) - 2C12 TCR - Hybrid mouse variable and human constant domains | polymer | 207 | 22779.2 | 2 | Homo sapiens (Human) | Human nkt tcr beta chain | |
| 4 | D, H | NKT Vbeta8.2 (MOUSE) - 2C12 TCR - hybrid mouse variable and human constant domains | polymer | 242 | 27114.0 | 2 | Mus musculus (Mouse) | ||
| 5 | I, J | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 6 | A, E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
| 7 | A, E | N-[(2S,3R)-3-hydroxy-1-{[6-O-(3-phenylpropanoyl)-alpha-D-galactopyranosyl]oxy}octadecan-2-yl]hexacosanamide | non-polymer | 974.5 | 2 | Chemie (QWV) | |||
| 8 | water | water | 18.0 | 172 | Chemie (HOH) |
Sequence modifications
A, E: 1 - 279 (UniProt: A0A0R4J090)
| PDB | External Database | Details |
|---|---|---|
| Gly 280 | - | expression tag |
| Ser 281 | - | expression tag |
| Leu 282 | - | expression tag |
| His 283 | - | expression tag |
| His 284 | - | expression tag |
| Ile 285 | - | expression tag |
| Leu 286 | - | expression tag |
| Asp 287 | - | expression tag |
| Ala 288 | - | expression tag |
| Gln 289 | - | expression tag |
| Lys 290 | - | expression tag |
| Met 291 | - | expression tag |
| Val 292 | - | expression tag |
| Trp 293 | - | expression tag |
| Asn 294 | - | expression tag |
| His 295 | - | expression tag |
| Arg 296 | - | expression tag |
| His 297 | - | expression tag |
| His 298 | - | expression tag |
| His 299 | - | expression tag |
| His 300 | - | expression tag |
| His 301 | - | expression tag |
| His 302 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 192431.0 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 848.8 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 2833.8 | |
| All* | Total formula weight | 196113.6 |
