6BKG
Human LigIV catalytic domain with bound DNA-adenylate intermediate in closed conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | DNA ligase 4 | polymer | 621 | 70695.6 | 1 | UniProt (P49917) Pfam (PF04675) Pfam (PF01068) Pfam (PF04679) | Homo sapiens (Human) | DNA ligase IV,Polydeoxyribonucleotide synthase [ATP] 4 |
| 2 | B (P) | DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*C)-3') | polymer | 11 | 3365.2 | 1 | synthetic construct | ||
| 3 | C (T) | DNA (5'-D(*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') | polymer | 18 | 5486.6 | 1 | synthetic construct | ||
| 4 | D (D) | DNA (5'-D(P*(AMP)P*GP*TP*CP*GP*GP*AP*C)-3') | polymer | 7 | 2138.4 | 1 | synthetic construct | ||
| 5 | E, F (A) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 6 | G (A) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 7 | H (A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 8 | I (D) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 1 | Chemie (AMP) | |||
| 9 | J, K, L, M (A, P, T, D) | water | water | 18.0 | 112 | Chemie (HOH) |
Sequence modifications
A: 1 - 620 (UniProt: P49917)
| PDB | External Database | Details |
|---|---|---|
| Thr 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 81685.8 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 503.2 | |
| All* | Total formula weight | 82189.0 |
