6B6W
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, as-isolated (protein batch 2), oxidized C-cluster
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Carbon monoxide dehydrogenase | polymer | 637 | 67715.9 | 2 | UniProt (Q72A99) Pfam (PF03063) | Desulfovibrio vulgaris | |
| 2 | C, J (A, B) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
| 3 | D, E, Q, R (A, B) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) PubChem (888) | |||
| 4 | F, S (A, B) | FE(4)-NI(1)-S(4) CLUSTER | non-polymer | 410.3 | 2 | Chemie (XCC) | |||
| 5 | G, T (A, B) | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) PubChem (934) | |||
| 6 | H, U (A, B) | Oxidizided C-cluster | non-polymer | 351.6 | 2 | Chemie (3TM) | |||
| 7 | I (B) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 1 | Chemie (FES) | |||
| 8 | K, L, M, N (B) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) PubChem (753) | |||
| 9 | O, P (B) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) PubChem (312) | |||
| 10 | V, W (A, B) | water | water | 18.0 | 1147 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 629 (UniProt: Q72A99)
| PDB | External Database | Details |
|---|---|---|
| Met -7 | - | expression tag |
| Trp -6 | - | expression tag |
| Ser -5 | - | expression tag |
| His -4 | - | expression tag |
| Pro -3 | - | expression tag |
| Ala -2 | - | expression tag |
| Val -1 | - | expression tag |
| Arg 0 | - | expression tag |
| Lys 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 135431.8 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 3056.9 | |
| All* | Total formula weight | 138488.7 |
