6B6W
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, as-isolated (protein batch 2), oxidized C-cluster
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004601 | molecular_function | peroxidase activity |
| A | 0006091 | biological_process | generation of precursor metabolites and energy |
| A | 0016151 | molecular_function | nickel cation binding |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| A | 0042542 | biological_process | response to hydrogen peroxide |
| A | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050418 | molecular_function | hydroxylamine reductase activity |
| A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| A | 0098869 | biological_process | cellular oxidant detoxification |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004601 | molecular_function | peroxidase activity |
| B | 0006091 | biological_process | generation of precursor metabolites and energy |
| B | 0016151 | molecular_function | nickel cation binding |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0018492 | molecular_function | obsolete carbon-monoxide dehydrogenase (acceptor) activity |
| B | 0042542 | biological_process | response to hydrogen peroxide |
| B | 0043885 | molecular_function | anaerobic carbon-monoxide dehydrogenase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050418 | molecular_function | hydroxylamine reductase activity |
| B | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| B | 0098869 | biological_process | cellular oxidant detoxification |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | binding site for residue SF4 A 701 |
| Chain | Residue |
| A | CYS51 |
| A | ASN53 |
| A | CYS54 |
| A | CYS59 |
| A | VAL73 |
| A | CYS74 |
| A | ARG84 |
| A | MET203 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 702 |
| Chain | Residue |
| A | HOH1085 |
| A | HOH1256 |
| B | HOH1239 |
| B | HOH1304 |
| A | HOH811 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue MG A 703 |
| Chain | Residue |
| A | HOH829 |
| A | HOH984 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | binding site for residue XCC A 704 |
| Chain | Residue |
| A | HIS266 |
| A | CYS301 |
| A | CYS302 |
| A | CYS340 |
| A | CYS448 |
| A | CYS478 |
| A | CYS519 |
| A | TYR553 |
| A | SER554 |
| A | LYS556 |
| A | CUV705 |
| site_id | AC5 |
| Number of Residues | 13 |
| Details | binding site for residue CUV A 705 |
| Chain | Residue |
| A | HIS266 |
| A | CYS301 |
| A | CYS302 |
| A | CYS340 |
| A | GLY447 |
| A | CYS448 |
| A | GLY477 |
| A | CYS478 |
| A | CYS519 |
| A | TYR553 |
| A | SER554 |
| A | LYS556 |
| A | XCC704 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue FES B 701 |
| Chain | Residue |
| A | CYS42 |
| A | CYS45 |
| A | THR50 |
| B | CYS42 |
| B | CYS45 |
| B | THR50 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue SF4 B 702 |
| Chain | Residue |
| B | CYS51 |
| B | CYS54 |
| B | CYS59 |
| B | CYS74 |
| B | ARG84 |
| B | MET203 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 703 |
| Chain | Residue |
| A | CYS42 |
| A | ARG60 |
| B | CYS42 |
| B | PHE44 |
| B | ARG60 |
| B | ASP138 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue GOL B 704 |
| Chain | Residue |
| B | ASP79 |
| B | GLY581 |
| B | SER582 |
| B | GLU583 |
| B | ASN584 |
| B | HOH1051 |
| B | HOH1147 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 705 |
| Chain | Residue |
| B | GLY27 |
| B | ILE28 |
| B | SER29 |
| B | ILE348 |
| B | HOH1004 |
| site_id | AD2 |
| Number of Residues | 10 |
| Details | binding site for residue GOL B 706 |
| Chain | Residue |
| A | PRO361 |
| B | LEU183 |
| B | GLY184 |
| B | ARG200 |
| B | SER211 |
| B | VAL214 |
| B | ARG218 |
| B | HOH1003 |
| B | HOH1061 |
| B | HOH1181 |
| site_id | AD3 |
| Number of Residues | 4 |
| Details | binding site for residue CL B 707 |
| Chain | Residue |
| A | ARG64 |
| A | LYS65 |
| A | HOH1228 |
| B | ALA144 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue CL B 708 |
| Chain | Residue |
| B | ARG163 |
| B | ASN164 |
| B | ALA165 |
| B | HOH1228 |
| site_id | AD5 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 709 |
| Chain | Residue |
| A | HOH1241 |
| A | HOH1269 |
| B | HOH832 |
| B | HOH845 |
| B | HOH1272 |
| site_id | AD6 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 710 |
| Chain | Residue |
| B | HOH815 |
| B | HOH894 |
| B | HOH1034 |
| B | HOH1220 |
| B | HOH1257 |
| B | HOH1384 |
| site_id | AD7 |
| Number of Residues | 11 |
| Details | binding site for residue XCC B 711 |
| Chain | Residue |
| B | CYS301 |
| B | CYS302 |
| B | CYS340 |
| B | CYS448 |
| B | CYS478 |
| B | CYS519 |
| B | TYR553 |
| B | SER554 |
| B | LYS556 |
| B | CUV712 |
| B | HIS266 |
| site_id | AD8 |
| Number of Residues | 13 |
| Details | binding site for residue CUV B 712 |
| Chain | Residue |
| B | HIS266 |
| B | CYS301 |
| B | CYS302 |
| B | CYS340 |
| B | GLY447 |
| B | CYS448 |
| B | GLY477 |
| B | CYS478 |
| B | CYS519 |
| B | TYR553 |
| B | SER554 |
| B | LYS556 |
| B | XCC711 |
