6ASO
Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | U4/U6 snRNA-associated-splicing factor PRP24 | polymer | 424 | 49049.6 | 1 | UniProt (P49960) Pfam (PF00076) Pfam (PF16842) Pfam (PF05391) In PDB | Saccharomyces cerevisiae (Baker's yeast) | U4/U6 snRNP protein |
2 | B | U6 snRNA-associated Sm-like protein LSm2 | polymer | 95 | 11177.9 | 1 | UniProt (P38203) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | Small nuclear ribonucleoprotein D homolog SNP3 |
3 | C | U6 snRNA-associated Sm-like protein LSm3 | polymer | 97 | 11081.4 | 1 | UniProt (P57743) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | SmX4 protein |
4 | D | U6 snRNA-associated Sm-like protein LSm4 | polymer | 93 | 10627.1 | 1 | UniProt (P40070) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
5 | E | U6 snRNA-associated Sm-like protein LSm5 | polymer | 93 | 10433.0 | 1 | UniProt (P40089) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
6 | F | U6 snRNA-associated Sm-like protein LSm6 | polymer | 88 | 9550.7 | 1 | UniProt (A6ZYX7) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
7 | G | U6 snRNA-associated Sm-like protein LSm7 | polymer | 115 | 13027.0 | 1 | UniProt (P53905) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
8 | H | U6 snRNA-associated Sm-like protein LSm8 | polymer | 115 | 13232.3 | 1 | UniProt (P47093) Pfam (PF01423) In PDB | Saccharomyces cerevisiae (Baker's yeast) | |
9 | I | Saccharomyces cerevisiae strain HB_S_GIMBLETTROAD_9 chromosome XII sequence | polymer | 84 | 27017.9 | 1 | GenBank (1039023481) | Saccharomyces cerevisiae | |
10 | A, I | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
11 | I | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
12 | I | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
13 | water | water | 18.0 | 134 | Chemie (HOH) |
Sequence modifications
A: 28 - 444 (UniProt: P49960)
C: 1 - 89 (UniProt: P57743)
F: 1 - 86 (UniProt: A6ZYX7)
H: 1 - 109 (UniProt: P47093)
I: 30 - 113 (GenBank: 1039023481)
PDB | External Database | Details |
---|---|---|
Met 27 | - | initiating methionine |
His 445 | - | expression tag |
His 446 | - | expression tag |
His 447 | - | expression tag |
His 448 | - | expression tag |
His 449 | - | expression tag |
His 450 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Trp 90 | - | expression tag |
Ser 91 | - | expression tag |
His 92 | - | expression tag |
Pro 93 | - | expression tag |
Gln 94 | - | expression tag |
Phe 95 | - | expression tag |
Glu 96 | - | expression tag |
Lys 97 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -1 | - | expression tag |
Ser 0 | - | expression tag |
PDB | External Database | Details |
---|---|---|
His 110 | - | expression tag |
His 111 | - | expression tag |
His 112 | - | expression tag |
His 113 | - | expression tag |
His 114 | - | expression tag |
His 115 | - | expression tag |
PDB | External Database | Details |
---|---|---|
G 62 | A 366024 | conflict |
G 79 | A 366041 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 155196.9 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 181.7 | |
All* | Total formula weight | 155378.6 |