Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6ASO

Structure of yeast U6 snRNP with 3'-phosphate terminated U6 RNA

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000244	biological_process	spliceosomal tri-snRNP complex assembly
A	0000245	biological_process	spliceosomal complex assembly
A	0000398	biological_process	mRNA splicing, via spliceosome
A	0003676	molecular_function	nucleic acid binding
A	0003723	molecular_function	RNA binding
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005681	cellular_component	spliceosomal complex
A	0005688	cellular_component	U6 snRNP
A	0006397	biological_process	mRNA processing
A	0008380	biological_process	RNA splicing
A	0017069	molecular_function	snRNA binding
A	0017070	molecular_function	U6 snRNA binding
A	1990904	cellular_component	ribonucleoprotein complex
B	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
B	0000398	biological_process	mRNA splicing, via spliceosome
B	0000932	cellular_component	P-body
B	0003723	molecular_function	RNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005681	cellular_component	spliceosomal complex
B	0005688	cellular_component	U6 snRNP
B	0005730	cellular_component	nucleolus
B	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
B	0005737	cellular_component	cytoplasm
B	0006364	biological_process	rRNA processing
B	0006397	biological_process	mRNA processing
B	0008033	biological_process	tRNA processing
B	0008380	biological_process	RNA splicing
B	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
B	0071001	cellular_component	U4/U6 snRNP
B	0071011	cellular_component	precatalytic spliceosome
B	0071013	cellular_component	catalytic step 2 spliceosome
B	1990726	cellular_component	Lsm1-7-Pat1 complex
B	1990904	cellular_component	ribonucleoprotein complex
C	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
C	0000398	biological_process	mRNA splicing, via spliceosome
C	0000932	cellular_component	P-body
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005681	cellular_component	spliceosomal complex
C	0005688	cellular_component	U6 snRNP
C	0005730	cellular_component	nucleolus
C	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
C	0005737	cellular_component	cytoplasm
C	0006364	biological_process	rRNA processing
C	0006397	biological_process	mRNA processing
C	0008033	biological_process	tRNA processing
C	0008380	biological_process	RNA splicing
C	0033962	biological_process	P-body assembly
C	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
C	0071001	cellular_component	U4/U6 snRNP
C	0071011	cellular_component	precatalytic spliceosome
C	0071013	cellular_component	catalytic step 2 spliceosome
C	0120114	cellular_component	Sm-like protein family complex
C	1990726	cellular_component	Lsm1-7-Pat1 complex
C	1990904	cellular_component	ribonucleoprotein complex
D	0000398	biological_process	mRNA splicing, via spliceosome
D	0000956	biological_process	nuclear-transcribed mRNA catabolic process
D	0003723	molecular_function	RNA binding
D	0006396	biological_process	RNA processing
E	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
E	0000398	biological_process	mRNA splicing, via spliceosome
E	0000932	cellular_component	P-body
E	0000956	biological_process	nuclear-transcribed mRNA catabolic process
E	0003723	molecular_function	RNA binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005681	cellular_component	spliceosomal complex
E	0005688	cellular_component	U6 snRNP
E	0005730	cellular_component	nucleolus
E	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
E	0005737	cellular_component	cytoplasm
E	0006364	biological_process	rRNA processing
E	0006397	biological_process	mRNA processing
E	0008033	biological_process	tRNA processing
E	0008380	biological_process	RNA splicing
E	0022613	biological_process	ribonucleoprotein complex biogenesis
E	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
E	0071001	cellular_component	U4/U6 snRNP
E	1990726	cellular_component	Lsm1-7-Pat1 complex
E	1990904	cellular_component	ribonucleoprotein complex
F	0000398	biological_process	mRNA splicing, via spliceosome
F	0000932	cellular_component	P-body
F	0003723	molecular_function	RNA binding
F	0005634	cellular_component	nucleus
F	0005681	cellular_component	spliceosomal complex
F	0005688	cellular_component	U6 snRNP
F	0005730	cellular_component	nucleolus
F	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
F	0005737	cellular_component	cytoplasm
F	0006364	biological_process	rRNA processing
F	0006397	biological_process	mRNA processing
F	0008033	biological_process	tRNA processing
F	0008380	biological_process	RNA splicing
F	0030490	biological_process	maturation of SSU-rRNA
F	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
F	0120114	cellular_component	Sm-like protein family complex
F	1990904	cellular_component	ribonucleoprotein complex
G	0000290	biological_process	deadenylation-dependent decapping of nuclear-transcribed mRNA
G	0000398	biological_process	mRNA splicing, via spliceosome
G	0000932	cellular_component	P-body
G	0000956	biological_process	nuclear-transcribed mRNA catabolic process
G	0003723	molecular_function	RNA binding
G	0005515	molecular_function	protein binding
G	0005634	cellular_component	nucleus
G	0005681	cellular_component	spliceosomal complex
G	0005688	cellular_component	U6 snRNP
G	0005730	cellular_component	nucleolus
G	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
G	0005737	cellular_component	cytoplasm
G	0006364	biological_process	rRNA processing
G	0006397	biological_process	mRNA processing
G	0008033	biological_process	tRNA processing
G	0008380	biological_process	RNA splicing
G	0030490	biological_process	maturation of SSU-rRNA
G	0032991	cellular_component	protein-containing complex
G	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
G	0071001	cellular_component	U4/U6 snRNP
G	0071004	cellular_component	U2-type prespliceosome
G	0071013	cellular_component	catalytic step 2 spliceosome
G	0097526	cellular_component	spliceosomal tri-snRNP complex
G	1990726	cellular_component	Lsm1-7-Pat1 complex
G	1990904	cellular_component	ribonucleoprotein complex
H	0000398	biological_process	mRNA splicing, via spliceosome
H	0003723	molecular_function	RNA binding
H	0003729	molecular_function	mRNA binding
H	0005515	molecular_function	protein binding
H	0005634	cellular_component	nucleus
H	0005681	cellular_component	spliceosomal complex
H	0005688	cellular_component	U6 snRNP
H	0005730	cellular_component	nucleolus
H	0005737	cellular_component	cytoplasm
H	0006364	biological_process	rRNA processing
H	0006397	biological_process	mRNA processing
H	0008033	biological_process	tRNA processing
H	0008380	biological_process	RNA splicing
H	0032991	cellular_component	protein-containing complex
H	0046540	cellular_component	U4/U6 x U5 tri-snRNP complex
H	0071001	cellular_component	U4/U6 snRNP
H	0071011	cellular_component	precatalytic spliceosome
H	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	binding site for residue MN I 201

Chain	Residue
I	A44
I	U46

site_id	AC2
Number of Residues	4
Details	binding site for residue K I 202

Chain	Residue
I	A59
I	G60
I	G86
I	U87

site_id	AC3
Number of Residues	2
Details	binding site for residue MG I 203

Chain	Residue
I	U74
I	A75

site_id	AC4
Number of Residues	2
Details	binding site for residue MG I 204

Chain	Residue
I	A41
I	A40

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	75
Details	Domain: {"description":"RRM 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00176","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	78
Details	Domain: {"description":"RRM 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00176","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	79
Details	Domain: {"description":"RRM 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00176","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	74
Details	Domain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)