5ZVB
APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | APEBEC3F/ssDNA-T9 | polymer | 209 | 25154.2 | 2 | UniProt (Q9HC16) UniProt (Q8IUX4) Pfam (PF08210) In PDB | Homo sapiens (Human) | APOBEC-related cytidine deaminase,ARCD,APOBEC-related protein 9,ARP-9,CEM-15,CEM15,Deoxycytidine deaminase,A3G,Apolipoprotein B mRNA-editing enzyme catalytic polypeptide-like 3F,A3F |
2 | C | DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*T)-3') | polymer | 9 | 2704.8 | 1 | DNA-binding vector pODB80 | ||
3 | A, B | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
4 | A, B | CACODYLATE ION | non-polymer | 137.0 | 2 | Chemie (CAC) | |||
5 | water | water | 18.0 | 211 | Chemie (HOH) |
Sequence modifications
A, B: -23 - -1 (UniProt: Q9HC16)
A, B: 218 - 373 (UniProt: Q8IUX4)
PDB | External Database | Details |
---|---|---|
Mse -53 | - | expression tag |
Ala -52 | - | expression tag |
His -51 | - | expression tag |
His -50 | - | expression tag |
His -49 | - | expression tag |
His -48 | - | expression tag |
His -47 | - | expression tag |
His -46 | - | expression tag |
Val -45 | - | expression tag |
Asp -44 | - | expression tag |
Asp -43 | - | expression tag |
Asp -42 | - | expression tag |
Asp -41 | - | expression tag |
Lys -40 | - | expression tag |
Mse -39 | - | expression tag |
Leu -38 | - | expression tag |
Val -37 | - | expression tag |
Pro -36 | - | expression tag |
Arg -35 | - | expression tag |
Gly -34 | - | expression tag |
Ser -33 | - | expression tag |
Glu -32 | - | expression tag |
Asn -31 | - | expression tag |
Leu -30 | - | expression tag |
Tyr -29 | - | expression tag |
Phe -28 | - | expression tag |
Gln -27 | - | expression tag |
Gly -26 | - | expression tag |
Ser -25 | - | expression tag |
Ala -24 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 53013.3 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 404.8 | |
All* | Total formula weight | 53418.1 |