5ZDZ
Hairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in Ca2+
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C | mouse RAG1 | polymer | 627 | 71871.3 | 2 | UniProt (P15919) Pfam (PF12940) In PDB | Mus musculus (Mouse) | RAG-1 |
| 2 | B, D | mouse RAG2 | polymer | 389 | 43225.7 | 2 | UniProt (P21784) Pfam (PF03089) In PDB | Mus musculus (Mouse) | RAG-2 |
| 3 | N | HMGB1 A-B box | polymer | 163 | 18897.9 | 1 | UniProt (P63158) Pfam (PF09011) Pfam (PF00505) In PDB | Mus musculus (Mouse) | High mobility group protein 1,HMG-1 |
| 4 | F | DNA (5'-D(*TP*AP*TP*CP*TP*GP*GP*CP*CP*TP*GP*TP*CP*TP*TP*A)-3') | polymer | 45 | 13979.0 | 1 | synthetic construct | ||
| 5 | I | DNA (54-MER) | polymer | 16 | 4864.2 | 1 | synthetic construct | ||
| 6 | J | DNA (30-MER) | polymer | 16 | 4855.1 | 1 | synthetic construct | ||
| 7 | G | DNA (39-MER) | polymer | 54 | 16640.7 | 1 | synthetic construct | ||
| 8 | L | DNA chain L | polymer | 30 | 9138.9 | 1 | synthetic construct | ||
| 9 | M | DNA chain M | polymer | 39 | 12036.8 | 1 | synthetic construct | ||
| 10 | A, C | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
| 11 | A, C | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 12 | A, C | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
| 13 | A, C | POTASSIUM ION | non-polymer | 39.1 | 2 | Chemie (K) | |||
| 14 | water | water | 18.0 | 128 | Chemie (HOH) |
Sequence modifications
A, C: 384 - 1008 (UniProt: P15919)
B, D: 1 - 387 (UniProt: P21784)
| PDB | External Database | Details |
|---|---|---|
| Gly 382 | - | cloning artifact |
| Pro 383 | - | cloning artifact |
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | cloning artifact |
| Pro 0 | - | cloning artifact |
| Val 1 | Met 1 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 310606.6 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 475.4 | |
| All* | Total formula weight | 311082.0 |
