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5YX1

Crystal structure of hematopoietic prostaglandin D synthase in complex with U004

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Hematopoietic prostaglandin D synthasepolymer19823239.64UniProt (O60760)
Pfam (PF02798)
Pfam (PF14497)
Homo sapiens (Human)H-PGDS,GST class-sigma,Glutathione S-transferase,Glutathione-dependent PGD synthase,Glutathione-requiring prostaglandin D synthase,Prostaglandin-H2 D-isomerase
2E, J
(A, C)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
3F, G, K, M
(A, B, C, D)
GLUTATHIONEnon-polymer307.34Chemie (GSH)
4H, L, N
(B, C, D)
ethyl 4-[(8R)-3,8-dimethyl-4-oxo-4,6,7,8,9,10-hexahydrothieno[2',3':4,5]pyrimido[1,2-a]azepin-2-yl]carbamoylpiperazine-1-carboxylatenon-polymer447.63Chemie (UX4)
5I, O
(B, D)
GLYCEROLnon-polymer92.12Chemie (GOL)
6P, Q, R, S
(A, B, C, D)
waterwater18.0895Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight92958.5
Non-Polymers*Number of molecules11
Total formula weight2804.7
All*Total formula weight95763.3
*Water molecules are not included.

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PDB entries from 2026-03-18

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