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5YTZ

Crystal structure of echinomycin-d(ACGTCGT)2 complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
DNA (5'-D(P*AP*CP*GP*TP*CP*GP*(UD))-3')polymer72178.32unidentified
2C, D
(D, F)
Echinomycinpolymer8809.02NOR (NOR01126)
BIRD (PRD_000491)
Streptomyces echinatus
3E, F
(A, B)
MANGANESE (II) IONnon-polymer54.92Chemie (MN)
4G, H, J, K
(D, F)
2-CARBOXYQUINOXALINEnon-polymer174.24BIRD (PRD_000491)
Chemie (QUI)
5I
(D)
POTASSIUM IONnon-polymer39.11Chemie (K)
6L, M, N, O
(A, B, D, F)
waterwater18.0100Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight5974.6
Non-Polymers*Number of molecules7
Total formula weight845.6
All*Total formula weight6820.2
*Water molecules are not included.

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PDB entries from 2026-01-28

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