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5YTZ

Crystal structure of echinomycin-d(ACGTCGT)2 complex

Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue MN A 101
ChainResidue
ADG3
ADG3
AHOH205
AHOH205
AHOH210
AHOH210
AHOH221
AHOH221

site_idAC2
Number of Residues6
Detailsbinding site for residue MN B 101
ChainResidue
BDG3
BHOH214
BHOH214
FHOH206
FHOH206
BDG3

site_idAC3
Number of Residues6
Detailsbinding site for residue K D 103
ChainResidue
DN2C3
DN2C3
DMVA4
DMVA4
DHOH205
DHOH205

site_idAC4
Number of Residues10
Detailsbinding site for Di-peptide DSN D 1 and ALA D 2
ChainResidue
BDG6
BBRU7
DN2C3
DMVA4
DALA6
DNCY7
DMVA8
DQUI101
DHOH206
FN2C3

site_idAC5
Number of Residues10
Detailsbinding site for Di-peptide DSN D 1 and MVA D 8
ChainResidue
ADC2
BDG6
BBRU7
DALA2
DN2C3
DALA6
DNCY7
DQUI101
DHOH206
FN2C3

site_idAC6
Number of Residues14
Detailsbinding site for Di-peptide ALA D 2 and N2C D 3
ChainResidue
BDG6
DDSN1
DMVA4
DMVA4
DDSN5
DALA6
DNCY7
DMVA8
DQUI101
DK103
DK103
FDSN1
FNCY7
FMVA8

site_idAC7
Number of Residues13
Detailsbinding site for residues N2C D 3 and NCY D 7
ChainResidue
DDSN1
DALA2
DMVA4
DMVA4
DDSN5
DALA6
DMVA8
DK103
DK103
DHOH201
FDSN1
FNCY7
FMVA8

site_idAC8
Number of Residues13
Detailsbinding site for residues N2C D 3 and MVA D 4
ChainResidue
BDT4
DDSN1
DALA2
DDSN5
DALA6
DNCY7
DK103
DK103
DHOH202
FDSN1
FNCY7
FMVA8
FMVA8

site_idAC9
Number of Residues13
Detailsbinding site for Di-peptide MVA D 4 and DSN D 5
ChainResidue
ADG3
ADT4
BDT4
DALA2
DN2C3
DN2C3
DALA6
DQUI102
DK103
DK103
DHOH202
DHOH205
FMVA8

site_idAD1
Number of Residues10
Detailsbinding site for Di-peptide DSN D 5 and ALA D 6
ChainResidue
DMVA8
DQUI102
DHOH205
FMVA8
ADG3
ADT4
DALA2
DN2C3
DMVA4
DNCY7

site_idAD2
Number of Residues10
Detailsbinding site for Di-peptide ALA D 6 and NCY D 7
ChainResidue
ADG3
DDSN1
DALA2
DN2C3
DMVA4
DDSN5
DMVA8
DQUI102
DHOH201
FNCY7

site_idAD3
Number of Residues8
Detailsbinding site for residues NCY D 7 and MVA D 8
ChainResidue
ADC2
BDG6
DDSN1
DALA2
DN2C3
DALA6
DHOH201
FNCY7

site_idAD4
Number of Residues11
Detailsbinding site for Di-peptide QUI D 101 and DSN D 1
ChainResidue
ADA1
ADC2
BDG6
BBRU7
DALA2
DN2C3
DNCY7
DMVA8
DHOH203
DHOH206
FN2C3

site_idAD5
Number of Residues10
Detailsbinding site for Di-peptide QUI D 102 and DSN D 5
ChainResidue
ADG3
ADT4
BDT4
BDC5
DN2C3
DMVA4
DALA6
DHOH204
DHOH205
FMVA8

site_idAD6
Number of Residues11
Detailsbinding site for Di-peptide DSN F 1 and ALA F 2
ChainResidue
BDC2
BDG3
BDT4
DN2C3
FN2C3
FMVA4
FALA6
FNCY7
FMVA8
FQUI101
FHOH204

site_idAD7
Number of Residues13
Detailsbinding site for Di-peptide DSN F 1 and MVA F 8
ChainResidue
ADT4
ADC5
BDG3
BDT4
DN2C3
DMVA4
DDSN5
DHOH202
FALA2
FALA6
FNCY7
FQUI101
FHOH204

site_idAD8
Number of Residues10
Detailsbinding site for Di-peptide ALA F 2 and N2C F 3
ChainResidue
BDC2
BDG3
DDSN1
FDSN1
FMVA4
FDSN5
FALA6
FNCY7
FMVA8
FQUI101

site_idAD9
Number of Residues10
Detailsbinding site for residues N2C F 3 and NCY F 7
ChainResidue
DDSN1
DN2C3
DNCY7
FDSN1
FALA2
FMVA4
FDSN5
FALA6
FMVA8
FHOH202

site_idAE1
Number of Residues8
Detailsbinding site for residues N2C F 3 and MVA F 4
ChainResidue
ADG6
BDA1
BDC2
DDSN1
FALA2
FDSN5
FALA6
FNCY7

site_idAE2
Number of Residues10
Detailsbinding site for Di-peptide MVA F 4 and DSN F 5
ChainResidue
ADG6
ABRU7
BDA1
BDC2
FALA2
FN2C3
FALA6
FQUI102
FHOH201
FHOH205

site_idAE3
Number of Residues11
Detailsbinding site for Di-peptide DSN F 5 and ALA F 6
ChainResidue
ADC5
ADG6
ABRU7
FALA2
FN2C3
FMVA4
FNCY7
FMVA8
FQUI102
FHOH201
FHOH205

site_idAE4
Number of Residues12
Detailsbinding site for Di-peptide ALA F 6 and NCY F 7
ChainResidue
ADC5
ADG6
DN2C3
DNCY7
FDSN1
FALA2
FN2C3
FMVA4
FDSN5
FMVA8
FQUI102
FHOH202

site_idAE5
Number of Residues13
Detailsbinding site for residues NCY F 7 and MVA F 8
ChainResidue
ADT4
ADC5
BDG3
DN2C3
DMVA4
DDSN5
DNCY7
DHOH202
FDSN1
FALA2
FN2C3
FALA6
FHOH202

site_idAE6
Number of Residues10
Detailsbinding site for Di-peptide QUI F 101 and DSN F 1
ChainResidue
ADT4
ADC5
BDG3
BDT4
DN2C3
FALA2
FNCY7
FMVA8
FHOH204
FHOH206

site_idAE7
Number of Residues10
Detailsbinding site for Di-peptide QUI F 102 and DSN F 5
ChainResidue
ADG6
ABRU7
BDA1
BDC2
FN2C3
FMVA4
FALA6
FHOH201
FHOH203
FHOH205

222036

PDB entries from 2024-07-03

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