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5YTY

Crystal structure of echinomycin-d(ACGACGT/ACGTCGT) complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA (5'-D(P*AP*CP*GP*AP*CP*GP*T)-3')polymer72122.41unidentified
2B
(B)
DNA (5'-D(P*AP*CP*GP*TP*CP*GP*T)-3')polymer72113.41unidentified
3C, D
(D, F)
echinomycinpolymer8809.02NOR (NOR01126)
BIRD (PRD_000491)
Streptomyces echinatus
4E, G
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
5F
(B)
MANGANESE (II) IONnon-polymer54.91Chemie (MN)
6H, I, J, K
(D, F)
2-CARBOXYQUINOXALINEnon-polymer174.24BIRD (PRD_000491)
Chemie (QUI)
7L, M, N, O
(A, B, D, F)
waterwater18.065Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight5853.9
Non-Polymers*Number of molecules7
Total formula weight800.2
All*Total formula weight6654.0
*Water molecules are not included.

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PDB entries from 2025-12-24

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