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5YTD

large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the natural base pair 5fC:dGTP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase I, thermostablepolymer53960865.91UniProt (P19821)Thermus aquaticusTaq polymerase 1
2B
(B)
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')polymer123617.41synthetic construct
3C
(C)
DNA (5'-D(*AP*AP*AP*(5FC)P*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')polymer164952.21synthetic construct
4D
(A)
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (DGT)
5E, F
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6G, H, I
(A, B, C)
waterwater18.0239Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight69435.5
Non-Polymers*Number of molecules3
Total formula weight555.8
All*Total formula weight69991.3
*Water molecules are not included.

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PDB entries from 2026-02-25

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