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5YTD

large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with the natural base pair 5fC:dGTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue DGT A 901
ChainResidue
AARG573
AARG660
ALYS663
APHE667
ATYR671
AASP785
AMG902
AMG903
AHOH1026
AHOH1093
AHOH1115
AASP610
AHOH1116
AHOH1121
BDOC112
C5FC204
CDG205
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 902
ChainResidue
AASP610
ATYR611
AASP785
ADGT901
AMG903

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 903
ChainResidue
AASP610
AASP785
ADGT901
AMG902
AHOH1039
AHOH1093
BDOC112

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

219140

PDB entries from 2024-05-01

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