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5YR4

Human methionine aminopeptidase type 1b (F309M mutant) in complex with TNP470

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Methionine aminopeptidase 1polymer30434162.91UniProt (P53582)
Pfam (PF00557)
Homo sapiens (Human)MetAP 1,Peptidase M 1
2B, C, D, E
(A)
COBALT (II) IONnon-polymer58.94Chemie (CO)
3F
(A)
POTASSIUM IONnon-polymer39.11Chemie (K)
4G
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
5H
(A)
(1R,2S,3S,4R)-4-hydroxy-2-methoxy-4-methyl-3-[(2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl]cyclohexyl (chloroacetyl)carbamatenon-polymer403.91Chemie (TN4)
6I
(A)
waterwater18.0161Chemie (HOH)
Sequence modifications
A: 90 - 393 (UniProt: P53582)
PDBExternal DatabaseDetails
Met 309Phe 300engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight34162.9
Non-Polymers*Number of molecules7
Total formula weight770.8
All*Total formula weight34933.8
*Water molecules are not included.

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PDB entries from 2025-12-17

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