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5YR4

Human methionine aminopeptidase type 1b (F309M mutant) in complex with TNP470

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0070006molecular_functionmetalloaminopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CO A 401
ChainResidue
AASP229
AASP240
AGLU367
ACO402
AHOH446
AHOH475

site_idAC2
Number of Residues8
Detailsbinding site for residue CO A 402
ChainResidue
AGLU336
AGLU367
ACO401
ATN4410
AHOH475
AASP240
AHIS303
ATHR334

site_idAC3
Number of Residues5
Detailsbinding site for residue CO A 403
ChainResidue
AHIS212
ATN4410
AHOH573
AHOH574
AHOH575

site_idAC4
Number of Residues5
Detailsbinding site for residue CO A 404
ChainResidue
AGLU128
ATYR195
AHIS310
AHOH576
AHOH577

site_idAC5
Number of Residues5
Detailsbinding site for residue K A 405
ChainResidue
ASER205
AASN207
AVAL209
ASER363
AHOH436

site_idAC6
Number of Residues13
Detailsbinding site for residue GOL A 406
ChainResidue
ATHR172
ATHR204
ASER205
AVAL206
AGLY213
AILE214
APRO215
AASP216
AHOH434
AHOH438
AHOH469
AHOH578
AHOH579

site_idAC7
Number of Residues20
Detailsbinding site for residue TN4 A 410
ChainResidue
ATYR195
ACYS203
AHIS212
ASER299
ATYR300
ACYS301
AHIS303
AMET309
AHIS310
AGLU336
ACO402
ACO403
AHOH475
AHOH522
AHOH571
AHOH572
AHOH573
AHOH574
AHOH575
AHOH576

Functional Information from PROSITE/UniProt
site_idPS00680
Number of Residues19
DetailsMAP_1 Methionine aminopeptidase subfamily 1 signature. YcGHGIHklmHtapnVp.HY
ChainResidueDetails
ATYR300-TYR318

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_03174","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"16724298","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16823043","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17114291","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_03174","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"16274222","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16724298","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16823043","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17114291","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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