5YFV
Crystal structure of ribose-1,5-bisphosphate isomerase mutant C135S from Pyrococcus horikoshii OT3 in complex with ribose-1,5-bisphosphate and AMP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Ribose-1,5-bisphosphate isomerase | polymer | 324 | 36440.3 | 3 | UniProt (O57947) | Pyrococcus horikoshii | |
| 2 | D, H, K (A, B, C) | 1,5-di-O-phosphono-alpha-D-ribofuranose | non-polymer | 310.1 | 3 | Chemie (RI2) PubChem (3036640) PubChem (1073) PubChem (125010) PubChem (439420) PubChem (14035695) PubChem (173002944) | |||
| 3 | E, I, L (A, B, C) | ADENOSINE MONOPHOSPHATE | non-polymer | 347.2 | 3 | Chemie (AMP) PubChem (16397049) PubChem (16760266) PubChem (40459109) PubChem (46875232) PubChem (40467049) PubChem (40469468) PubChem (44348067) PubChem (45358029) PubChem (177678969) PubChem (6083) PubChem (46874558) PubChem (1549371) PubChem (92144436) PubChem (57358045) PubChem (12358354) PubChem (57879893) PubChem (57879902) PubChem (224) PubChem (122197642) PubChem (34768) PubChem (83862) PubChem (446048) PubChem (515384) PubChem (638042) PubChem (5316444) PubChem (5742864) PubChem (12163610) PubChem (12358355) PubChem (162290139) PubChem (162946266) PubChem (171699505) | |||
| 4 | F, J, M (A, B, C) | POTASSIUM ION | non-polymer | 39.1 | 3 | Chemie (K) PubChem (813) | |||
| 5 | G (A) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 1 | Chemie (MPD) | |||
| 6 | N, O, P (A, B, C) | water | water | 18.0 | 254 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 324 (UniProt: O57947)
| PDB | External Database | Details |
|---|---|---|
| Ser 135 | Cys 135 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 109320.9 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 2207.4 | |
| All* | Total formula weight | 111528.3 |
