5Y9Y
Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Uncharacterized protein KdoO | polymer | 318 | 36239.3 | 1 | UniProt (B3DUR4) Pfam (PF11004) | Methylacidiphilum infernorum (isolate V4) | 3-Deoxy-D-manno-oct-2-ulosonic acid hydroxylase |
| 2 | B (A) | COBALT (II) ION | non-polymer | 58.9 | 1 | Chemie (CO) | |||
| 3 | C (A) | SUCCINIC ACID | non-polymer | 118.1 | 1 | Chemie (SIN) | |||
| 4 | D (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 5 | E, F, G, H, I (A) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 5 | Chemie (PG4) | |||
| 6 | J, K, L, M (A) | ACETATE ION | non-polymer | 59.0 | 4 | Chemie (ACT) | |||
| 7 | N, O (A) | SULFATE ION | non-polymer | 96.1 | 2 | Chemie (SO4) | |||
| 8 | P (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 9 | Q (A) | water | water | 18.0 | 246 | Chemie (HOH) |
Sequence modifications
A: 1 - 305 (UniProt: B3DUR4)
| PDB | External Database | Details |
|---|---|---|
| Lys 306 | - | expression tag |
| Leu 307 | - | expression tag |
| Ala 308 | - | expression tag |
| Ala 309 | - | expression tag |
| Ala 310 | - | expression tag |
| Leu 311 | - | expression tag |
| Glu 312 | - | expression tag |
| His 313 | - | expression tag |
| His 314 | - | expression tag |
| His 315 | - | expression tag |
| His 316 | - | expression tag |
| His 317 | - | expression tag |
| His 318 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 36239.3 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 1704.0 | |
| All* | Total formula weight | 37943.3 |
