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5Y9Y

Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with succinate and Co(II)

Functional Information from GO Data
ChainGOidnamespacecontents
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue CO A 401
ChainResidue
AHIS146
AASP148
AHIS260
ASIN402
AHOH643

site_idAC2
Number of Residues12
Detailsbinding site for residue SIN A 402
ChainResidue
ATRP176
AHIS260
AVAL262
ACO401
AACT412
AHOH507
AHOH543
AHOH643
AASP142
AHIS146
AASP148
AARG174

site_idAC3
Number of Residues9
Detailsbinding site for residue GOL A 403
ChainResidue
APRO12
AGLY40
AGLY179
AGLU180
AVAL258
ALEU259
AHOH582
AHOH587
AHOH675

site_idAC4
Number of Residues6
Detailsbinding site for residue PG4 A 404
ChainResidue
AILE178
AGLY179
ATYR220
AVAL241
ALEU295
AHOH624

site_idAC5
Number of Residues3
Detailsbinding site for residue PG4 A 405
ChainResidue
AALA106
APHE202
AHOH505

site_idAC6
Number of Residues2
Detailsbinding site for residue PG4 A 406
ChainResidue
ALYS200
AARG214

site_idAC7
Number of Residues5
Detailsbinding site for residue PG4 A 407
ChainResidue
ASER153
APRO154
ATHR155
AHIS274
ASO4414

site_idAC8
Number of Residues4
Detailsbinding site for residue PG4 A 408
ChainResidue
APRO154
ATYR205
AGLY212
ATYR213

site_idAC9
Number of Residues2
Detailsbinding site for residue ACT A 409
ChainResidue
ALYS264
AHOH628

site_idAD1
Number of Residues3
Detailsbinding site for residue ACT A 410
ChainResidue
AASN296
AHOH504
AHOH540

site_idAD2
Number of Residues2
Detailsbinding site for residue ACT A 411
ChainResidue
AHOH511
AHOH512

site_idAD3
Number of Residues4
Detailsbinding site for residue ACT A 412
ChainResidue
AARG127
APHE150
AARG162
ASIN402

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 A 413
ChainResidue
ATHR79
ALYS276
AASN278
ASER304
AHOH655

site_idAD5
Number of Residues3
Detailsbinding site for residue SO4 A 414
ChainResidue
AARG76
AHIS274
APG4407

site_idAD6
Number of Residues6
Detailsbinding site for residue CL A 415
ChainResidue
APHE16
AASP17
ALYS32
AHOH501
AHOH663
AHOH709

237735

PDB entries from 2025-06-18

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