5XT3
The catalytic domain of GdpP with c-di-GMP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Phosphodiesterase acting on cyclic dinucleotides | polymer | 339 | 37728.8 | 2 | UniProt (A0A0U1MUE2) Pfam (PF01368) Pfam (PF02272) | Staphylococcus aureus | |
| 2 | C, D, F (A, B) | MANGANESE (II) ION | non-polymer | 54.9 | 3 | Chemie (MN) | |||
| 3 | E, G (A, B) | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one) | non-polymer | 690.4 | 2 | Chemie (C2E) | |||
| 4 | H, I (A, B) | water | water | 18.0 | 132 | Chemie (HOH) |
Sequence modifications
A, B: 316 - 651 (UniProt: A0A0U1MUE2)
| PDB | External Database | Details |
|---|---|---|
| Gly 313 | - | expression tag |
| Ser 314 | - | expression tag |
| Met 315 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 75457.6 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 1545.6 | |
| All* | Total formula weight | 77003.2 |
